BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0127.0004.p
         (170 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312648|ref|YP_003776740.1| MerR family transcription regul...   177   4e-46

>gi|300312648|ref|YP_003776740.1| MerR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 144

 Score =  177 bits (449), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 87/127 (68%), Positives = 100/127 (78%)

Query: 1   MTTSLTIQQAAAKTGLSVHTLRYYEKIGLLDPIARQDNTHRLYREEDLLWIGFLLKLRST 60
           MTTSLTI QAA  TGLSVHTLRYYE+IGLLDP+ R+DN HR Y +EDL WI FL KL++T
Sbjct: 1   MTTSLTIAQAAQATGLSVHTLRYYERIGLLDPVERRDNHHRRYTQEDLDWIAFLKKLKAT 60

Query: 61  GLPVRDMLRYAELRRAGNTAESVSARKALLQQHARTVEETIAELQSNLSILHMKVKMYED 120
           GLPVR MLRYAELRRAGNT ESVS RKALLQ H   V+ T+AELQ NL++L  K+ +YE 
Sbjct: 61  GLPVRAMLRYAELRRAGNTVESVSQRKALLQAHTLCVQHTLAELQENLAVLQHKLVLYEA 120

Query: 121 METTPPA 127
           +E    A
Sbjct: 121 LEQQASA 127


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.129    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 492,146
Number of extensions: 17361
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 91
Effective length of database: 1,245,805
Effective search space: 113368255
Effective search space used: 113368255
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)