BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0126.0004.p (146 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313870|ref|YP_003777962.1| nitrate/sulfonate/bicarbonate A... 167 4e-43 gi|300310977|ref|YP_003775069.1| alkanesulfonates ABC transporte... 97 7e-22 gi|300310915|ref|YP_003775007.1| alkanesulfonates ABC transporte... 86 2e-18 gi|300309984|ref|YP_003774076.1| nitrate/sulfonate/bicarbonate A... 84 5e-18 gi|300309986|ref|YP_003774078.1| nitrate/sulfonate/bicarbonate A... 60 9e-11 >gi|300313870|ref|YP_003777962.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 323 Score = 167 bits (422), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 81/110 (73%), Positives = 91/110 (82%) Query: 1 VFANASGVNAVYLAAEQPYPKGIGIFVAQDSAIRSIKELKGKKVALGRGWNVQYLLVRAL 60 VFANASGVNAVYL AEQPYPKGIGIFVAQ+S IRS+ +LKGKKVA GRGWNVQ+LL++AL Sbjct: 98 VFANASGVNAVYLGAEQPYPKGIGIFVAQESPIRSVADLKGKKVATGRGWNVQFLLLKAL 157 Query: 61 EEAGLSYNDIVPVYVSNAADVRAAFQSGNVDAXLVRAAFQSGNRKSRHAR 110 EE GLSY DI PVYV+NAADVRAAFQSGNVDA + F +G + R Sbjct: 158 EEVGLSYRDIEPVYVTNAADVRAAFQSGNVDAATLWDPFLAGQELATRPR 207 >gi|300310977|ref|YP_003775069.1| alkanesulfonates ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 327 Score = 96.7 bits (239), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 52/110 (47%), Positives = 72/110 (65%), Gaps = 1/110 (0%) Query: 1 VFANASGVNAVYLAAEQPYPKGIGIFVAQDSAIRSIKELKGKKVALGRGWNVQYLLVRAL 60 VFA A+G + VY A E P P G+ V ++S I+S+ ELKGKK+A +G +V +L+V L Sbjct: 107 VFAQAAGADFVYTAYEIPTPDAEGLLVQKNSPIKSVAELKGKKIAFNKGSDVHWLVVALL 166 Query: 61 EEAGLSYNDIVPVYVSNAADVRAAFQSGNVDAXLVRAAFQSGNRKSRHAR 110 ++AGL Y+DI PVY++ AD RAAF+ G VDA + FQ+ K AR Sbjct: 167 KKAGLQYSDIQPVYLA-PADARAAFERGAVDAWAIWDPFQAAAEKQVGAR 215 >gi|300310915|ref|YP_003775007.1| alkanesulfonates ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 336 Score = 85.5 bits (210), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 44/110 (40%), Positives = 67/110 (60%), Gaps = 1/110 (0%) Query: 1 VFANASGVNAVYLAAEQPYPKGIGIFVAQDSAIRSIKELKGKKVALGRGWNVQYLLVRAL 60 +FA A+G VY+ A P P + V DS ++ ++LKGK++AL +G NV Y LV+ L Sbjct: 113 IFAQAAGTPLVYVGATVPRPYVEAVLVKDDSELQRPQQLKGKRIALNKGSNVHYFLVKLL 172 Query: 61 EEAGLSYNDIVPVYVSNAADVRAAFQSGNVDAXLVRAAFQSGNRKSRHAR 110 E+ GL Y D+ PV+++ AD RAAF+ G VDA + + + ++ AR Sbjct: 173 EKHGLKYGDVTPVWLA-PADARAAFERGAVDAWAIWEPYLAAAQQGLKAR 221 >gi|300309984|ref|YP_003774076.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 328 Score = 84.0 bits (206), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 46/110 (41%), Positives = 65/110 (59%), Gaps = 1/110 (0%) Query: 1 VFANASGVNAVYLAAEQPYPKGIGIFVAQDSAIRSIKELKGKKVALGRGWNVQYLLVRAL 60 VFA A+G Y+A E P P I V DS +R +LKGKK+A+ + V YLL+ L Sbjct: 102 VFAQAAGAKLAYVAQESPSPAAQAIVVRADSVLRKASDLKGKKIAVTKAAGVHYLLIATL 161 Query: 61 EEAGLSYNDIVPVYVSNAADVRAAFQSGNVDAXLVRAAFQSGNRKSRHAR 110 E+AGL ++D+ Y+S AD RAAF+ G+VDA + F +G ++ R Sbjct: 162 EKAGLKFSDVDAAYLS-PADGRAAFERGSVDAWVTWDPFLAGVQRQSQVR 210 >gi|300309986|ref|YP_003774078.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 328 Score = 59.7 bits (143), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 38/107 (35%), Positives = 61/107 (57%), Gaps = 10/107 (9%) Query: 4 NASGVNAVYLAAEQPYPKGIGIFVAQDSAIRSIKELKGKKVALGRGWNVQYLLVRALEEA 63 N + V AVY+ + P+ + V ++S ++SI ELKGKK+A +G + L+RAL E Sbjct: 102 NGNPVKAVYIYSR---PEWTALAVGKESPVKSINELKGKKIAATKGTDPYLFLLRALHEN 158 Query: 64 GLSYNDIVPVYVSNAADVRAAFQSGNV------DAXLVRAAFQSGNR 104 GL +D+ V++ + AD RAA + G V D L + ++G+R Sbjct: 159 GLKKSDVEIVHLQH-ADGRAALEQGRVAAWAGLDPHLAASELEAGSR 204 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.127 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 392,134 Number of extensions: 13727 Number of successful extensions: 69 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 65 Number of HSP's successfully gapped: 5 Length of query: 146 Length of database: 1,619,870 Length adjustment: 77 Effective length of query: 69 Effective length of database: 1,255,275 Effective search space: 86613975 Effective search space used: 86613975 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)