BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0126.0001.p
         (125 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313871|ref|YP_003777963.1| thiophene oxidase [Herbaspirill...   125   1e-30
gi|300314031|ref|YP_003778123.1| coenzyme F420-dependent N5,N10-...    59   1e-10

>gi|300313871|ref|YP_003777963.1| thiophene oxidase [Herbaspirillum
           seropedicae SmR1]
          Length = 433

 Score =  125 bits (313), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 58/83 (69%), Positives = 68/83 (81%)

Query: 42  LPLADIGRLYAGGVLVPQVAGTAAEVADWMENIVAQQGADGFVITPAHLPEGFDDFVDLV 101
           L LAD GRLYA GVL PQ+AGTAA+VADW+++I+   GADGFVI+P+HLP GFDDFVD V
Sbjct: 347 LTLADAGRLYAQGVLTPQIAGTAADVADWLQSIIVANGADGFVISPSHLPYGFDDFVDQV 406

Query: 102 VPELQRRGQFRLDYEGDTLRSYL 124
           +PELQRRG FR DY G  LR +L
Sbjct: 407 IPELQRRGAFRQDYAGRQLRQHL 429


>gi|300314031|ref|YP_003778123.1| coenzyme F420-dependent
           N5,N10-methylene tetrahydromethanopterin reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 459

 Score = 58.9 bits (141), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 40/65 (61%)

Query: 60  VAGTAAEVADWMENIVAQQGADGFVITPAHLPEGFDDFVDLVVPELQRRGQFRLDYEGDT 119
           + G    VAD +E+ VA  G DG+ +T    PE F+DFV+LV+P LQ RG ++ +Y   T
Sbjct: 370 IVGAPDRVADELESWVADTGIDGYNLTRTVTPESFEDFVELVIPVLQERGSYKREYAQGT 429

Query: 120 LRSYL 124
           LR  L
Sbjct: 430 LREKL 434


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.141    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 475,262
Number of extensions: 20907
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 2
Length of query: 125
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 50
Effective length of database: 1,264,745
Effective search space: 63237250
Effective search space used: 63237250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 125 (52.8 bits)