BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0125.0006.p
         (227 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312757|ref|YP_003776849.1| Zn-dependent peptidase [Herbasp...   264   5e-72
gi|300313431|ref|YP_003777523.1| zinc protease [Herbaspirillum s...    71   9e-14

>gi|300312757|ref|YP_003776849.1| Zn-dependent peptidase
           [Herbaspirillum seropedicae SmR1]
          Length = 929

 Score =  264 bits (674), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 123/151 (81%), Positives = 138/151 (91%)

Query: 17  VLSLPAGVSQGPSAEGITEYRFGNGFKLLLMPDASKPTVTVNMTYLVGSRQENYGETGMA 76
           + SLPAGVS GPSAEGI+EYRF NGFKLLL+PD S+PTVTVN+TYLVGSR ENYGETGMA
Sbjct: 44  IKSLPAGVSAGPSAEGISEYRFANGFKLLLLPDDSQPTVTVNITYLVGSRHENYGETGMA 103

Query: 77  HLLEHLMFKGTPQHGAIPQEFSKRGMSFNGTTSLDRTNYYEFFPAGDENLQWAIAMEADR 136
           HLLEHLMFKG+P+H +IPQ+FSKRGM+FNGTT LDRTNYYE F A  +NL+WAIAMEADR
Sbjct: 104 HLLEHLMFKGSPRHPSIPQDFSKRGMNFNGTTWLDRTNYYETFQASPDNLRWAIAMEADR 163

Query: 137 MLNSFIAQKDLDSEMTVVRNEFESGENSPTK 167
           MLNS IA+KDLDSEMTVVRNEFE+GE SPT+
Sbjct: 164 MLNSKIARKDLDSEMTVVRNEFEAGETSPTR 194


>gi|300313431|ref|YP_003777523.1| zinc protease [Herbaspirillum
           seropedicae SmR1]
          Length = 459

 Score = 70.9 bits (172), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 66/131 (50%), Gaps = 4/131 (3%)

Query: 29  SAEGITEYRFGNGFKLLLMPDASKPTVTVNMTYLVGSRQENYGETGMAHLLEHLMFKGTP 88
            AE   ++  GNG K+++  D   PT    + Y VG   E  G TG++H LEH+MFKGT 
Sbjct: 25  QAEPARQFVLGNGMKVIVKEDRRAPTAVQMVWYKVGGIDEVNGLTGVSHALEHMMFKGTR 84

Query: 89  QH--GAIPQEFSKRGMSFNGTTSLDRTNYYEFFPAGDENLQWAIAMEADRMLNSFIAQKD 146
            H  G   +  ++ G   N  T+ D T Y++       +L+  +A+EADRM N      +
Sbjct: 85  NHKVGEFSRLVAELGGQENAFTANDFTAYFQQIE--KSHLEKVMALEADRMANLQFDAAE 142

Query: 147 LDSEMTVVRNE 157
              E+ V+  E
Sbjct: 143 FAKEIRVIMEE 153


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.129    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 652,218
Number of extensions: 25841
Number of successful extensions: 74
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 2
Length of query: 227
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 145
Effective length of database: 1,231,600
Effective search space: 178582000
Effective search space used: 178582000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)