BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0125.0004.p
         (490 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312755|ref|YP_003776847.1| N-acetylglutamate synthase [Her...   718   0.0  
gi|300313586|ref|YP_003777678.1| acetylglutamate kinase [Herbasp...   108   9e-25

>gi|300312755|ref|YP_003776847.1| N-acetylglutamate synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 451

 Score =  718 bits (1853), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/397 (88%), Positives = 369/397 (92%), Gaps = 3/397 (0%)

Query: 1   MRNMENDTDFASFVAWLRSVAPYVHAFRGKTFVIAFPGELVTAGGLAVLAQDLSLLHALG 60
           MR ME  T+F   V WLRSVAPYVHAFRGKTFV+AFPGELVTAG L VLAQDLSLLHALG
Sbjct: 12  MRVMEKQTEF---VNWLRSVAPYVHAFRGKTFVVAFPGELVTAGDLQVLAQDLSLLHALG 68

Query: 61  IRIVVVHGSRPQVEEQLALRNVEARFHNGLRITDPAALECAKEAAGELRLDIEAAFSQGL 120
           IR+VVVHGSRPQV EQLALRNVEARFHNGLR+ D AALECAKEAAGELRLDIEAAFSQGL
Sbjct: 69  IRVVVVHGSRPQVAEQLALRNVEARFHNGLRVADSAALECAKEAAGELRLDIEAAFSQGL 128

Query: 121 PNTPMAHAAIRVISGNFVTARPMGVIDGADLQLTGIVRKVAADTIHPILNAGGIVLLSPL 180
           PNTPMAH+AIRVISGNFVTARPMGVIDG DLQLTG+VRK+AAD I PI+NAGGIVLLSPL
Sbjct: 129 PNTPMAHSAIRVISGNFVTARPMGVIDGVDLQLTGVVRKIAADVIQPIMNAGGIVLLSPL 188

Query: 181 GFSPTGEAFNLAMEDVAVTAAIALRAEKLIFLSETPLMHDAGGTDIRELSSHQAEAVLQA 240
           GFSPTGEAFNL MEDVAV+AAIALRAEKLIFLSETP+M DAGG +IRELSSHQAEAVL A
Sbjct: 189 GFSPTGEAFNLTMEDVAVSAAIALRAEKLIFLSETPMMTDAGGAEIRELSSHQAEAVLSA 248

Query: 241 NFLPPDAAFYLQSAVKACNAGVSRAHIVPFATDGSVLLELFTHDGIGTMITYENLESLRE 300
            FL P+AAFYL S VKACNAGVSRAHIVPFATDGS LLELFTHDG+GTM+TYENLESLR+
Sbjct: 249 GFLSPEAAFYLASVVKACNAGVSRAHIVPFATDGSALLELFTHDGVGTMVTYENLESLRQ 308

Query: 301 ATIEDVGGILKLIEPLEADGTLVKRGRELIEREIHYFSVIEHDNVIFGCAALYPFPKERM 360
           ATIEDVGGILKLIEPLEADGTLVKRGRELIEREIHYFSVIEHDNVIFGCAALYPFPKERM
Sbjct: 309 ATIEDVGGILKLIEPLEADGTLVKRGRELIEREIHYFSVIEHDNVIFGCAALYPFPKERM 368

Query: 361 GEMACLTVNPEVQAQGDGERILKHIETRARKXGKPRV 397
           GEMACLTVNPEVQ QGDG+RILKHIETRAR+ G  ++
Sbjct: 369 GEMACLTVNPEVQGQGDGDRILKHIETRAREAGLTKL 405


>gi|300313586|ref|YP_003777678.1| acetylglutamate kinase
           [Herbaspirillum seropedicae SmR1]
          Length = 297

 Score =  108 bits (270), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 135/283 (47%), Gaps = 24/283 (8%)

Query: 22  PYVHAFRGKTFVIAFPGELVTAGGLA-VLAQDLSLLHALGIRIVVVHGSRPQVEEQLALR 80
           PY+  F GKT V+ + G  +T   L    A+D+ LL  +G+  VVVHG  PQ++  L   
Sbjct: 22  PYIRKFHGKTIVVKYGGNAMTEESLKHGFARDVILLKLVGMNPVVVHGGGPQIDAALKKI 81

Query: 81  NVEARFHNGLRITDPAALECAKEA-AGELRLDIEAAFSQGLPNTPMAHA-AIRVISGNFV 138
             +  F  G+RITD   +E  +    GE++ DI       L N     A  +    G  +
Sbjct: 82  GKQGTFVQGMRITDEETMEVVEWVLGGEVQQDIVM-----LINHYGGQAVGLTGKDGGLI 136

Query: 139 TARPMGVID----GA--DLQLTGIVRKVAADTIHPILNAGGIVLLSPLGFSPTGEAFNLA 192
            AR M + D    GA  D+   G +  +    +  + +   I ++SP+GF   G+A+N+ 
Sbjct: 137 RARKMQMPDKEHPGAFLDIGYVGEIEAINPAVVKALQDDAFIPIISPIGFGDDGQAYNIN 196

Query: 193 MEDVAVTAAIALRAEKLIFLSETPLMHDAGG---TDI--RELSSHQAEAVLQANFLPPDA 247
            + VA   A  L AEKLI ++    + D  G   TD+  RE+    A+  +    LP   
Sbjct: 197 ADVVAGKIAEILHAEKLIMMTNIAGVQDKAGNLLTDLSAREIDEMFADGTISGGMLPK-- 254

Query: 248 AFYLQSAVKACNAGVSRAHIVPFATDGSVLLELFTHDGIGTMI 290
              + SA+ A  +GV+  HI+    + S+LLE+ T    GTMI
Sbjct: 255 ---ISSALDAAKSGVNTVHIIDGRIEHSLLLEVLTEQAFGTMI 294


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,586,516
Number of extensions: 67684
Number of successful extensions: 240
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 2
Length of query: 490
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 401
Effective length of database: 1,198,455
Effective search space: 480580455
Effective search space used: 480580455
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)