BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0124.0025.p
         (309 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312433|ref|YP_003776525.1| hypothetical protein Hsero_3133...   357   e-100
gi|300312432|ref|YP_003776524.1| hypothetical protein Hsero_3132...   105   5e-24

>gi|300312433|ref|YP_003776525.1| hypothetical protein Hsero_3133
           [Herbaspirillum seropedicae SmR1]
          Length = 437

 Score =  357 bits (915), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 166/223 (74%), Positives = 193/223 (86%)

Query: 87  INRVKISQTYGAMYAGDDALGKAYRDGIAARKELMAELSSNEQRMANNGAPLPNGMAIDA 146
           I++ ++ Q YG +Y GDDA+ KAYRDGIAAR+ELMAE++S EQ+MANNGAPLPNG+++D 
Sbjct: 215 IDQPRMMQAYGPLYEGDDAIAKAYRDGIAARRELMAEINSQEQQMANNGAPLPNGLSMDT 274

Query: 147 SRLGRLMRGDPKIRLGFLAVGGWDTHANQGNGAGQLAGRLAPLATGLATLAQELGPAFND 206
           +RLGRLMR DP+IRL FLAVGGWDTH NQGNG GQLAGRL+PL  GLATLA ELGPAFND
Sbjct: 275 ARLGRLMRHDPRIRLAFLAVGGWDTHINQGNGTGQLAGRLSPLGAGLATLAHELGPAFND 334

Query: 207 TVIVVISEFGRTFRENGNGGTDHGHGNVMWLLGGNVRGRTIYGQWPGLNKTELNEGRDLA 266
           TVIVV+SEFGRTFRENGNGGTDHGHGN MWL+GGN+RG  IYGQWPGLN+  LNEGRDLA
Sbjct: 335 TVIVVMSEFGRTFRENGNGGTDHGHGNAMWLMGGNLRGGKIYGQWPGLNQAALNEGRDLA 394

Query: 267 ITTDFRAVMSTLAEKHMRIPDSALQQIFPQYTMGMQHVSNILV 309
           ITTDFRAV+  L+E+HMRIPD AL++IFPQY  G + V  + V
Sbjct: 395 ITTDFRAVLCALSERHMRIPDRALEKIFPQYAAGSKGVPALFV 437


>gi|300312432|ref|YP_003776524.1| hypothetical protein Hsero_3132
           [Herbaspirillum seropedicae SmR1]
          Length = 574

 Score =  105 bits (261), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 54/87 (62%), Positives = 64/87 (73%), Gaps = 3/87 (3%)

Query: 1   MPLYGWLTPEGYKFSEEAWLNPDALLRRINFANGLSNGKSPIARAENTQPAANAEA--VD 58
           MPLYGWLTPEGYK+S+ AWLNPDALLRRINFA  L NGKSPIAR E   P +NA+A  VD
Sbjct: 474 MPLYGWLTPEGYKYSQAAWLNPDALLRRINFAGNLVNGKSPIARPEGEAPPSNADARPVD 533

Query: 59  PVRLIQTLSP-LLDQNAVTAIAAVRNI 84
             +L++TL P +  Q A   +AA  N+
Sbjct: 534 AQQLLRTLGPAVAPQTAAKILAAPENV 560


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 829,180
Number of extensions: 28384
Number of successful extensions: 87
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 2
Length of query: 309
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 224
Effective length of database: 1,217,395
Effective search space: 272696480
Effective search space used: 272696480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)