BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0124.0024.p
         (155 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312432|ref|YP_003776524.1| hypothetical protein Hsero_3132...    72   2e-14
gi|300312433|ref|YP_003776525.1| hypothetical protein Hsero_3133...    57   6e-10

>gi|300312432|ref|YP_003776524.1| hypothetical protein Hsero_3132
           [Herbaspirillum seropedicae SmR1]
          Length = 574

 Score = 72.4 bits (176), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 44/65 (67%), Gaps = 1/65 (1%)

Query: 13  PTLIDQPKITPQSHAARLWX-QEITPQSHAARLWLATESPRQLQEVMTEFWFNHFNIFEG 71
           P   D+     +  AAR    +E+TPQ H ARL  ATESPRQL+EVMTEFW NHFN+FEG
Sbjct: 173 PPSFDKEGSKEEKQAARQRAPRELTPQFHMARLLQATESPRQLEEVMTEFWANHFNVFEG 232

Query: 72  KAGLR 76
           K  +R
Sbjct: 233 KEWVR 237


>gi|300312433|ref|YP_003776525.1| hypothetical protein Hsero_3133
           [Herbaspirillum seropedicae SmR1]
          Length = 437

 Score = 57.0 bits (136), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/56 (58%), Positives = 34/56 (60%), Gaps = 4/56 (7%)

Query: 103 MKRRDFIRYMGMAGSGAILVPVGLSGCAVVPAGMPLYGWLTPE----GSSACRCTA 154
           M RRDFIRY+G A  GAILVPVGLSGCAV P G       TP     GS A R  A
Sbjct: 1   MNRRDFIRYLGAATGGAILVPVGLSGCAVAPTGDKSISRATPARLAYGSPAPRAHA 56


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 577,390
Number of extensions: 24102
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 2
Length of query: 155
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 77
Effective length of database: 1,250,540
Effective search space: 96291580
Effective search space used: 96291580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)