BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0124.0023.p
         (541 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312432|ref|YP_003776524.1| hypothetical protein Hsero_3132...   575   e-165

>gi|300312432|ref|YP_003776524.1| hypothetical protein Hsero_3132
           [Herbaspirillum seropedicae SmR1]
          Length = 574

 Score =  575 bits (1481), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 280/383 (73%), Positives = 319/383 (83%), Gaps = 3/383 (0%)

Query: 21  LNSQEQALHVLNRLAYGPRPGDVATVEKMGVKRYIDEQLNPERIPLPAELQSRLDGLATY 80
           L+ QE+ALHVLNRLAYGPRPGD+  VE+MGVKRYID+QL+PERIPLPA+LQ+ L  L   
Sbjct: 101 LSEQERALHVLNRLAYGPRPGDLEEVERMGVKRYIDQQLHPERIPLPAQLQASLAALPGL 160

Query: 81  QMSTSQLYVAYGPPSFPPNTASADEKNAARQRAAKEITPQSHAARLWLATESPRQLQEVM 140
           QM+ +QL+V YGPPSF     S +EK AARQRA +E+TPQ H ARL  ATESPRQL+EVM
Sbjct: 161 QMTPAQLFVDYGPPSFD-KEGSKEEKQAARQRAPRELTPQFHMARLLQATESPRQLEEVM 219

Query: 141 TEFWFNHFNIFEGKEWVRYWAADYEKNAIRPNALGNFRQLLGAVAHHPAMLYYLDNWLSS 200
           TEFW NHFN+FEGKEWVRYW  DYEKNAIRP ALGNFR LLGAVAHHPAMLYYLDNWLSS
Sbjct: 220 TEFWANHFNVFEGKEWVRYWVGDYEKNAIRPYALGNFRDLLGAVAHHPAMLYYLDNWLSS 279

Query: 201 GANTPQAKGRFKGLNENYARELMELHTLGVDGGYTQADVISLARILSGWTIVVPDMKQGG 260
           GA T  A+GRFKGLNENYARELMELHTLGVDGGY QADVI+LARILSGWTI V  MK G 
Sbjct: 280 GAGTRGARGRFKGLNENYARELMELHTLGVDGGYQQADVITLARILSGWTIDVNAMKAGA 339

Query: 261 DRVGFAFNPQRHDSAAKQFLGRTITPAGQQEGEQALDMLARNPATARFIATKLVQYFVSD 320
               F+F  QRHD + K FLG+ +   G QEGE ALD+LA +PATARFI+T+LVQYFVSD
Sbjct: 340 --APFSFAAQRHDPSPKVFLGKPLAATGYQEGEAALDILANHPATARFISTQLVQYFVSD 397

Query: 321 QADPALVDKLAQRFLASDGDIKTVLRTLFDSPQFWSRRNYQSQFKTPYQYVVSSLRATAT 380
           Q DPALV KL+Q FL++ GD++ VL+TLFDSPQFW+R NYQ+QFKTPYQ+VVS+LRA+  
Sbjct: 398 QPDPALVQKLSQTFLSTHGDLRAVLKTLFDSPQFWARSNYQTQFKTPYQFVVSALRASDI 457

Query: 381 PVVNARPVSGVLNQFGMPLYGWL 403
           PV NA+PV+G L QFGMPLYGWL
Sbjct: 458 PVRNAKPVNGALAQFGMPLYGWL 480


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,729,371
Number of extensions: 72693
Number of successful extensions: 231
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 451
Effective length of database: 1,193,720
Effective search space: 538367720
Effective search space used: 538367720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)