BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0124.0012.p
         (154 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312429|ref|YP_003776521.1| rhodanese-related sulfurtransfe...   243   7e-66
gi|300311651|ref|YP_003775743.1| rhodanese-related sulfurtransfe...    94   4e-21

>gi|300312429|ref|YP_003776521.1| rhodanese-related
           sulfurtransferase [Herbaspirillum seropedicae SmR1]
          Length = 153

 Score =  243 bits (619), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 113/152 (74%), Positives = 126/152 (82%)

Query: 3   SSSDILSTATQRAQAGQFPYAGAVTPQEAFALLQGNPAVKLVDVRTKAERDWVGQVVIPA 62
           S+ DILS ATQRA   Q PY GAVTP EA ALL+G+  +KLVDVRT+AERDWVG V I  
Sbjct: 2   STQDILSAATQRAVDAQLPYRGAVTPAEALALLEGDSRIKLVDVRTRAERDWVGVVQIAP 61

Query: 63  EQHLAVQWNLYPENTPNPQFLEQLGALADKQTILLFLCRSGVRSRHAAKLATENNYAHCY 122
            QHLAVQWNLYPE  PNPQFLEQL  + +   +LLFLCRSGVRS+HAAKLATE+ Y HC+
Sbjct: 62  AQHLAVQWNLYPEGKPNPQFLEQLREVTNPDDVLLFLCRSGVRSKHAAKLATEHGYTHCF 121

Query: 123 DILEGFEGNKDSAGHRKTVEGWCKAGLPWIGA 154
           DILEGFEGNKD+AGHRKTVEGWCKAGLPW+GA
Sbjct: 122 DILEGFEGNKDAAGHRKTVEGWCKAGLPWVGA 153


>gi|300311651|ref|YP_003775743.1| rhodanese-related
           sulfurtransferase [Herbaspirillum seropedicae SmR1]
          Length = 168

 Score = 94.4 bits (233), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/146 (42%), Positives = 84/146 (57%), Gaps = 6/146 (4%)

Query: 8   LSTATQRAQAGQFPYAGAVTPQEAFALLQGNPAVKLVDVRTKAERDWVGQVVIPAEQHLA 67
           L+    +A A   PYAG +TP++A+AL+Q    V LVDVRT  ER +VG V  P   H+A
Sbjct: 26  LAQIRAQAIADGLPYAGGITPKQAWALVQTG-KVLLVDVRTAEERKFVGHV--PDSLHVA 82

Query: 68  VQWNLYPENTPNPQFLEQL-GALADKQTILLFLCRSGVRSRHAAKLATENNYAHCYDILE 126
             W      + NP+F+ +L   L  K    L LCRSG RS  AA+ AT+   +  +++LE
Sbjct: 83  --WATGTSLSRNPRFVRELESKLGGKDVPALLLCRSGKRSAAAAEAATKAGLSCIFNVLE 140

Query: 127 GFEGNKDSAGHRKTVEGWCKAGLPWI 152
           GFEG  D+A  R   +GW   GLPW+
Sbjct: 141 GFEGELDAAQQRGKADGWRFHGLPWV 166


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 515,078
Number of extensions: 20668
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 2
Length of query: 154
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 77
Effective length of database: 1,255,275
Effective search space: 96656175
Effective search space used: 96656175
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)