BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0124.0011.p
         (471 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312427|ref|YP_003776519.1| glutamine synthetase [Herbaspir...   951   0.0  

>gi|300312427|ref|YP_003776519.1| glutamine synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 471

 Score =  951 bits (2458), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/471 (95%), Positives = 468/471 (99%)

Query: 1   MARTAAEVLKLVKDNEVKFVDFRFADTRGKEQHVTVPVSHFDIDKFESGHAFDGSSIAGW 60
           MARTAAEVLK+VKDNEVKFVDFRFADTRGKEQHV+VPVSHFDIDKFESGHAFDGSSIAGW
Sbjct: 1   MARTAAEVLKMVKDNEVKFVDFRFADTRGKEQHVSVPVSHFDIDKFESGHAFDGSSIAGW 60

Query: 61  KGIEASDMLLIPDPNTANIDPFMEETTLFMQCDVIEPSDGKGYDRDPRSIAKRAEAYLKS 120
           KGIEASDMLLIPDPNTANIDPFMEETTLFMQCDVIEPSDGKGYDRDPRSIAKRAEAYLKS
Sbjct: 61  KGIEASDMLLIPDPNTANIDPFMEETTLFMQCDVIEPSDGKGYDRDPRSIAKRAEAYLKS 120

Query: 121 SGLGDTAYFGPEPEFFIFDGVRWGADMSGSFVKIESEEASWSSGAKLEGGNTGHRPVVKG 180
           SGLGDTAYFGPEPEFFIFDGVRWGADMSGSFVKI+SEEASWS+GAK+EGGN+GHRP VKG
Sbjct: 121 SGLGDTAYFGPEPEFFIFDGVRWGADMSGSFVKIDSEEASWSTGAKIEGGNSGHRPTVKG 180

Query: 181 GYFPVPPVDSFQDMRSEMSLILESLGIPVEVHHHEVAGAGQNELGTKFSTLVERADWTQT 240
           GYFPVPPVDSFQDMRSEMSLI+ESLGIPVEVHHHEVAGAGQNELGTKFSTLVERADWTQT
Sbjct: 181 GYFPVPPVDSFQDMRSEMSLIIESLGIPVEVHHHEVAGAGQNELGTKFSTLVERADWTQT 240

Query: 241 LKYVIWNVAHTYGKTATFMPKPLVGDNGSGMHVHQSVWKDGKNLFAGDGYAGLSEFALFY 300
           +KYVIWNVAHTYGKTATFMPKPLVGDNGSGMHVHQSVWKDGKNLFAGDGYAGLSEFAL+Y
Sbjct: 241 MKYVIWNVAHTYGKTATFMPKPLVGDNGSGMHVHQSVWKDGKNLFAGDGYAGLSEFALYY 300

Query: 301 IGGIIKHAKALNAITNPGTNSYKRLVPGFEAPVKLAYSARNRSASIRIPHVANPKGRRIE 360
           IGGIIKHAKALNAITNPGTNSYKRLVPGFEAPVKLAYSARNRSASIRIPHVANPKGRRIE
Sbjct: 301 IGGIIKHAKALNAITNPGTNSYKRLVPGFEAPVKLAYSARNRSASIRIPHVANPKGRRIE 360

Query: 361 TRFPDPLANPYLCFSALLMAGLDGVQNKIHPGEAASKDLYHLPPEEDKLIPTVCASLEEA 420
           TRFPDPLANPYLCFSALLMAGLDGVQNKIHPGEAA+KDLYHLPPEEDKLIPTVC+SL+EA
Sbjct: 361 TRFPDPLANPYLCFSALLMAGLDGVQNKIHPGEAATKDLYHLPPEEDKLIPTVCSSLDEA 420

Query: 421 LDALNKDREFLTRGGVFTDSMIDAYLDLKGQEVQRYRMTTHPIEFDMYYSL 471
           L+ L+KDREFLTRGGVFTDSMIDAY+DLK QEVQR+RMTTHPIEFDMYYSL
Sbjct: 421 LEHLDKDREFLTRGGVFTDSMIDAYIDLKMQEVQRFRMTTHPIEFDMYYSL 471


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,582,880
Number of extensions: 71435
Number of successful extensions: 138
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 382
Effective length of database: 1,198,455
Effective search space: 457809810
Effective search space used: 457809810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)