BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0122.0033.p
         (83 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312733|ref|YP_003776825.1| multidrug ABC transporter ATPas...   139   6e-35
gi|300312861|ref|YP_003776953.1| multidrug ABC transporter ATPas...   107   2e-25
gi|300314059|ref|YP_003778151.1| multidrug ABC transporter ATPas...    92   7e-21
gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic (cyclol...    88   1e-19
gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPas...    83   5e-18

>gi|300312733|ref|YP_003776825.1| multidrug ABC transporter
           ATPase/permease [Herbaspirillum seropedicae SmR1]
          Length = 614

 Score =  139 bits (349), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 69/78 (88%), Positives = 74/78 (94%)

Query: 5   DEATSALDAESERLVQTALEAAMVGRTTLVIAHRLATVQRADRIIVVEHGRIVETGTHTE 64
           DEATSALDAESERLVQ ALEAAMVGRTTLVIAHRLATVQRADRIIV+EHGRIVE+GTH E
Sbjct: 536 DEATSALDAESERLVQGALEAAMVGRTTLVIAHRLATVQRADRIIVLEHGRIVESGTHAE 595

Query: 65  LIAQNGLYASLAALQFNT 82
           L+A++GLYA LAALQF T
Sbjct: 596 LVARDGLYAGLAALQFQT 613


>gi|300312861|ref|YP_003776953.1| multidrug ABC transporter
           ATPase/permease [Herbaspirillum seropedicae SmR1]
          Length = 578

 Score =  107 bits (267), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 52/81 (64%), Positives = 65/81 (80%)

Query: 1   LLLLDEATSALDAESERLVQTALEAAMVGRTTLVIAHRLATVQRADRIIVVEHGRIVETG 60
           +L+LDEATSALD ESER VQ AL+  M GRTT VIAHRL+T++RADRI+V+ HG+I E G
Sbjct: 493 ILILDEATSALDTESERAVQAALDRLMQGRTTFVIAHRLSTIERADRIVVLAHGQIAEIG 552

Query: 61  THTELIAQNGLYASLAALQFN 81
           TH  L+ Q G+YA+L  LQF+
Sbjct: 553 THQALLEQEGVYANLYRLQFS 573


>gi|300314059|ref|YP_003778151.1| multidrug ABC transporter
           ATPase/permease [Herbaspirillum seropedicae SmR1]
          Length = 618

 Score = 92.0 bits (227), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 46/79 (58%), Positives = 60/79 (75%)

Query: 1   LLLLDEATSALDAESERLVQTALEAAMVGRTTLVIAHRLATVQRADRIIVVEHGRIVETG 60
           +LLLDEATSALD+E E  +QT+L   M G+T + IAHRL+T+   DR+IV++ GRIVE G
Sbjct: 524 ILLLDEATSALDSEVEAAIQTSLYKLMEGKTVVAIAHRLSTIAAMDRLIVLDQGRIVEQG 583

Query: 61  THTELIAQNGLYASLAALQ 79
           +H EL+A NGLYA L + Q
Sbjct: 584 SHAELLAANGLYARLWSHQ 602


>gi|300312189|ref|YP_003776281.1| bacteriocin/lantibiotic
           (cyclolysin-type) secretion ABC transporter protein
           [Herbaspirillum seropedicae SmR1]
          Length = 726

 Score = 88.2 bits (217), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/80 (55%), Positives = 58/80 (72%), Gaps = 1/80 (1%)

Query: 1   LLLLDEATSALDAESERLVQTALEAAMVGRTTLVIAHRLATVQRADRIIVVEHGRIVETG 60
           +L+ DEATSALD ESE+++Q  +     GRT L+IAHRL+ V+ ADRIIV+E GR+ E+G
Sbjct: 635 ILIFDEATSALDYESEKIIQDNMRQICAGRTVLIIAHRLSAVRDADRIIVMERGRVAESG 694

Query: 61  THTELI-AQNGLYASLAALQ 79
           +H ELI    G+YA L  LQ
Sbjct: 695 SHDELIDLPGGIYAHLHRLQ 714


>gi|300311488|ref|YP_003775580.1| multidrug ABC transporter
           ATPase/permease [Herbaspirillum seropedicae SmR1]
          Length = 758

 Score = 82.8 bits (203), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 38/79 (48%), Positives = 60/79 (75%)

Query: 1   LLLLDEATSALDAESERLVQTALEAAMVGRTTLVIAHRLATVQRADRIIVVEHGRIVETG 60
           +L+LDEATS++D  +E+ +Q AL+  + GRTT+ IAHRL+T+++ADR++V++ G++VE G
Sbjct: 661 ILILDEATSSVDTTTEKEIQKALDNLVQGRTTIAIAHRLSTLRKADRLVVLDRGQVVEVG 720

Query: 61  THTELIAQNGLYASLAALQ 79
            H EL+A+ G Y  L   Q
Sbjct: 721 NHEELMAREGHYYKLYQAQ 739


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.130    0.338 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 213,657
Number of extensions: 6557
Number of successful extensions: 129
Number of sequences better than 1.0e-08: 6
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 6
Length of query: 83
Length of database: 1,619,870
Length adjustment: 54
Effective length of query: 29
Effective length of database: 1,364,180
Effective search space: 39561220
Effective search space used: 39561220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)