BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0122.0032.p (350 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312734|ref|YP_003776826.1| NADH:flavin oxidoreductase [Her... 448 e-127 gi|300313850|ref|YP_003777942.1| xenobiotic reductase A [Herbasp... 211 8e-56 gi|300312411|ref|YP_003776503.1| NADH:flavin oxidoreductase/NADH... 108 7e-25 >gi|300312734|ref|YP_003776826.1| NADH:flavin oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 448 bits (1153), Expect = e-127, Method: Compositional matrix adjust. Identities = 226/321 (70%), Positives = 260/321 (80%) Query: 26 AVGGAGLVIVEAAGVLAEGRITPEDVGIWKDEHIEPLQRLTRFIETQGSFAGIQLAHAGR 85 AVGGAGLV++EA V+AEGRI+ D+GIWKDEHI PL+R+TRFIE QG+ GIQLAHAGR Sbjct: 47 AVGGAGLVLMEATAVVAEGRISSADLGIWKDEHIAPLRRITRFIEQQGAVPGIQLAHAGR 106 Query: 86 KASAWRPWAGKAGTVPAAEGGWETVGPSALPFDATFKAPVELSVAAIAERVQAFADAAQR 145 K+S RPW G AG+VP + GGW PSALPFD + P +SV I VQAFADAAQR Sbjct: 107 KSSILRPWDGPAGSVPPSAGGWTPQAPSALPFDDGYSTPQAMSVEQIGALVQAFADAAQR 166 Query: 146 ALKAGFKVVEVHAAHGYLLHEFLSPLSNHRTDQYGGALENRARFLLEVVAAVRKVWPADL 205 AL AGFKV+E+H AHGYL H+FLSPLSN R+D+YGG+ ENR RFLLE+ A R VWP +L Sbjct: 167 ALAAGFKVIELHGAHGYLGHQFLSPLSNQRSDEYGGSFENRIRFLLEITRATRAVWPEEL 226 Query: 206 PLFVRVSATDWTDGGLTPDDIVAVSRLLREAGVDLVDVSSGGNVATAVIPTGPGYQTAFS 265 PL VR+SATDW DGG TP++ V +S+ LRE GVDLVDVSSGGN AVIP GPGYQT+F+ Sbjct: 227 PLLVRLSATDWVDGGWTPEETVTLSQRLRELGVDLVDVSSGGNAPKAVIPVGPGYQTSFA 286 Query: 266 ARVRNEAKIATGTVGMITDATQAEHVLRTEQADLVLLARELLRDPYWPLHAADELKENIA 325 ARV+ EA IA+G VGMITDA QAEH+LRT QADLVLLARELLRDPYWPLHAA +L+E +A Sbjct: 287 ARVKAEAGIASGAVGMITDAIQAEHILRTGQADLVLLARELLRDPYWPLHAAQQLREEVA 346 Query: 326 WPPQYVRAASSKTPLRENVDY 346 WPPQYVRAASSKTPLR V Y Sbjct: 347 WPPQYVRAASSKTPLRPEVQY 367 >gi|300313850|ref|YP_003777942.1| xenobiotic reductase A [Herbaspirillum seropedicae SmR1] Length = 362 Score = 211 bits (537), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 126/306 (41%), Positives = 170/306 (55%), Gaps = 4/306 (1%) Query: 18 HTRFQKXFAVGGAGLVIVEAAGVLAEGRITPEDVGIWKDEHIEPLQRLTRFIETQGSFAG 77 H A GGAGLVIVEA V EGRITP GIW D + + + I+ G+ G Sbjct: 38 HLSHYASIARGGAGLVIVEATAVSPEGRITPGCTGIWSDALGQAFVPVVQAIKAAGAVPG 97 Query: 78 IQLAHAGRKASAWRPWAGKAGTVPAAEGGWETVGPSALPFDATF-KAPVELSVAAIAERV 136 IQ+ HAGRKASA RPW G GW+T+ PSA+ + K P +S+ IA Sbjct: 98 IQIGHAGRKASANRPWEGDDHIAADDARGWDTLSPSAIAYGRGLPKVPKAMSLDDIARVR 157 Query: 137 QAFADAAQRALKAGFKVVEVHAAHGYLLHEFLSPLSNHRTDQYGGALENRARFLLEVVAA 196 Q F +AA RA +AGF+ +E+H AHGYL F S +N R D YGG++ENRARFLLE + A Sbjct: 158 QDFVNAAVRAREAGFEWLELHFAHGYLGQSFFSAHANQRDDLYGGSVENRARFLLETLRA 217 Query: 197 VRKVWPADLPLFVRVSATDWTDG--GLTPDDIVAVSRLLREAGVDLVDVSSGGNVATAVI 254 VR+VWP L L VR ++ DG T + + V R +++G+D++ V+ G + I Sbjct: 218 VREVWPEHLALTVRFGVLEY-DGRDEETLMESIGVVRQFKDSGMDMISVTIGFTIPEVQI 276 Query: 255 PTGPGYQTAFSARVRNEAKIATGTVGMITDATQAEHVLRTEQADLVLLARELLRDPYWPL 314 P GP + + RVR EA + + AE ++ Q DLV++ R L +P+W Sbjct: 277 PWGPAFLGPIAKRVREEAAVPVSSAWGFGTPALAEQAVKDGQLDLVMVGRSHLVNPHWTY 336 Query: 315 HAADEL 320 AA EL Sbjct: 337 QAAKEL 342 >gi|300312411|ref|YP_003776503.1| NADH:flavin oxidoreductase/NADH oxidase family protein [Herbaspirillum seropedicae SmR1] Length = 366 Score = 108 bits (270), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 69/180 (38%), Positives = 97/180 (53%), Gaps = 10/180 (5%) Query: 29 GAGLVIVEAAGVLAEGRITPEDVGIWKDEHIEPLQRLTRFIETQGSFAGIQLAHAGRKAS 88 GAGL+I EA + EG+ GI+ D H+ +++T + +G +QL H GR + Sbjct: 54 GAGLIIAEATQISPEGKGYAWTPGIYNDAHVAAWKKITDAVHAKGGRIFLQLWHVGRIS- 112 Query: 89 AWRPWAGKAGTVPAAEGGWETVGPSALPFDAT----FKAPVELSVAAIAERVQAFADAAQ 144 P +P A V P F + F P L A + V+ + AAQ Sbjct: 113 --HPDLQPGHALPVAP---SAVQPEGQAFTESGFKPFVTPRALEAAELPAIVEQYKKAAQ 167 Query: 145 RALKAGFKVVEVHAAHGYLLHEFLSPLSNHRTDQYGGALENRARFLLEVVAAVRKVWPAD 204 +++AGF VE+HAA+GYLL +FL +N RTD YGG++ENRAR LLEVV AV V P++ Sbjct: 168 LSMQAGFDGVEIHAANGYLLDQFLRDKTNQRTDGYGGSIENRARLLLEVVQAVTSVVPSE 227 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.133 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,209,682 Number of extensions: 53405 Number of successful extensions: 240 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 237 Number of HSP's successfully gapped: 3 Length of query: 350 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 264 Effective length of database: 1,212,660 Effective search space: 320142240 Effective search space used: 320142240 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)