BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0122.0031.p (385 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310772|ref|YP_003774864.1| NAD-dependent aldehyde dehydrog... 662 0.0 gi|300313231|ref|YP_003777323.1| NAD-dependent aldehyde dehydrog... 369 e-103 gi|300310410|ref|YP_003774502.1| NADP-dependent succinate-semial... 321 6e-89 gi|300310458|ref|YP_003774550.1| NADP-dependent succinate-semial... 262 4e-71 gi|300310471|ref|YP_003774563.1| NAD-dependent betaine aldehyde ... 219 3e-58 >gi|300310772|ref|YP_003774864.1| NAD-dependent aldehyde dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 477 Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust. Identities = 319/371 (85%), Positives = 343/371 (92%) Query: 1 MYKDVQLFINGRWTASVSDRTIPVVNPATEEVIGHIAHANKQDLDAALDAAQKGFDTWRK 60 MYKDVQLFING WTAS S RTI V+NPATEEVIG IAHA++ DLD AL+AA KGF+TWR Sbjct: 1 MYKDVQLFINGEWTASASGRTIDVINPATEEVIGKIAHADRADLDRALEAASKGFETWRN 60 Query: 61 TSAFERSKIMRKAANILRERADEVALLMTLEQGKPLAEAKAETLGAADTIDWFAEEARRT 120 SAFERSKIMR+AA++LRERA+EVA LMT+EQGKPLAEAK ETLGAADTIDWFAEEARRT Sbjct: 61 MSAFERSKIMRRAADLLRERAEEVARLMTMEQGKPLAEAKMETLGAADTIDWFAEEARRT 120 Query: 121 YGRLVPARVPNAYQMVIKEPVGPVAAFTPWNFPLNQVVRKLSAALAAGCSIIVKAPEETP 180 YGRLVPARVP AYQMVIKEPVGPVAAFTPWNFPLNQVVRKLSAALAAGCSIIVKAPEETP Sbjct: 121 YGRLVPARVPGAYQMVIKEPVGPVAAFTPWNFPLNQVVRKLSAALAAGCSIIVKAPEETP 180 Query: 181 ASPAELIRAFADAGIPDGVVNLVYGVPSEISEYLIPHPIIKKISFTGSTPVGKQLAALAG 240 ASPAELIRA+ADAG+P GV+NLVYGVP+EISEYLIPHP+IKKISFTGSTPVGKQLAALAG Sbjct: 181 ASPAELIRAYADAGVPAGVINLVYGVPAEISEYLIPHPVIKKISFTGSTPVGKQLAALAG 240 Query: 241 THMKRATMELGGHAPAIVFDDADIDAAAKQLAMAKFRNAGQVCVSPTRFLVQKNVFDAFV 300 HMKRATMELGGHAPA+VFDDAD+D AAK LA AKFRNAGQVCVSPTRFLVQK VF+AFV Sbjct: 241 QHMKRATMELGGHAPAMVFDDADVDVAAKMLATAKFRNAGQVCVSPTRFLVQKGVFNAFV 300 Query: 301 DKFITAASQLKVGDGTVAGTTMGPVANKRRIAALEALISDAVEQGAQLRFGGKRVGDKGY 360 DKF+T A QLKVG+G AG TMGPVANKRRI ALEALI DAV QGAQLR GGKR+G+KGY Sbjct: 301 DKFVTYAEQLKVGNGLEAGITMGPVANKRRIPALEALIDDAVSQGAQLRTGGKRIGNKGY 360 Query: 361 FFEPTVLTNVP 371 FF+PTVLTN+P Sbjct: 361 FFQPTVLTNLP 371 >gi|300313231|ref|YP_003777323.1| NAD-dependent aldehyde dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 480 Score = 369 bits (948), Expect = e-103, Method: Compositional matrix adjust. Identities = 189/371 (50%), Positives = 263/371 (70%) Query: 1 MYKDVQLFINGRWTASVSDRTIPVVNPATEEVIGHIAHANKQDLDAALDAAQKGFDTWRK 60 MY D+QL+I+GR+ R V +PAT +V+G + A + D++ A+ AA + F WR+ Sbjct: 1 MYPDLQLYIDGRFHGVEGRRYQEVRDPATGDVLGRLPWAERADIEEAIQAAHRAFQQWRQ 60 Query: 61 TSAFERSKIMRKAANILRERADEVALLMTLEQGKPLAEAKAETLGAADTIDWFAEEARRT 120 S ERS I+R+AA + RERA +A +T++ GKPLA+A AE + AA+ +DW AEE RR Sbjct: 61 VSPLERSDILRRAAALARERAQAMAPAITMDNGKPLADAVAEIINAAEHLDWHAEEGRRL 120 Query: 121 YGRLVPARVPNAYQMVIKEPVGPVAAFTPWNFPLNQVVRKLSAALAAGCSIIVKAPEETP 180 YGR+V AR P Q+V++EPVG AA +PWNFP Q ++K++AA+AAGC++++K P E+P Sbjct: 121 YGRVVGARHPEVRQLVVREPVGVCAAISPWNFPFGQAMKKVAAAMAAGCTVVLKGPSESP 180 Query: 181 ASPAELIRAFADAGIPDGVVNLVYGVPSEISEYLIPHPIIKKISFTGSTPVGKQLAALAG 240 A+ + + F DAG+P GV N+V GV SEIS++LI P+++ ISFTGS PVG +LAA A Sbjct: 181 AAIVLMAQLFHDAGVPAGVFNIVSGVSSEISQHLIESPLVRNISFTGSVPVGSKLAAQAA 240 Query: 241 THMKRATMELGGHAPAIVFDDADIDAAAKQLAMAKFRNAGQVCVSPTRFLVQKNVFDAFV 300 HMKR +MELGGHAP +VFDDA+++ AA+ LA K RNAGQVCVSP+RF VQK ++ FV Sbjct: 241 LHMKRMSMELGGHAPVLVFDDAEVEPAARLLARLKTRNAGQVCVSPSRFYVQKGIYARFV 300 Query: 301 DKFITAASQLKVGDGTVAGTTMGPVANKRRIAALEALISDAVEQGAQLRFGGKRVGDKGY 360 F A Q+KVG G G MGP+ + RR A++ LI DA+ QG++L GG R+G +G+ Sbjct: 301 TAFAEALLQIKVGPGHEPGVQMGPLIHGRRFEAVQGLIDDALAQGSELVTGGARLGQRGH 360 Query: 361 FFEPTVLTNVP 371 F+ PT++T VP Sbjct: 361 FYAPTLITGVP 371 >gi|300310410|ref|YP_003774502.1| NADP-dependent succinate-semialdehyde dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 484 Score = 321 bits (823), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 166/368 (45%), Positives = 229/368 (62%) Query: 6 QLFINGRWTASVSDRTIPVVNPATEEVIGHIAHANKQDLDAALDAAQKGFDTWRKTSAFE 65 Q F+NG+W + + V NPA E++GH+ + A++AA + W+K +A E Sbjct: 13 QAFVNGQWCDADQGERLAVHNPANGELLGHVPLMGAAETRRAIEAANAAWPAWKKKTAKE 72 Query: 66 RSKIMRKAANILRERADEVALLMTLEQGKPLAEAKAETLGAADTIDWFAEEARRTYGRLV 125 RS I+R+ ++ D++AL+MT EQGKPLAEA+ E AA I+WFAEE +RTYG + Sbjct: 73 RSAILRRWYELMLANTDDLALIMTAEQGKPLAEARGEIGYAASFIEWFAEEGKRTYGDTI 132 Query: 126 PARVPNAYQMVIKEPVGPVAAFTPWNFPLNQVVRKLSAALAAGCSIIVKAPEETPASPAE 185 P+ P+ +VIKE +G AA TPWNFP + RK ALAAGC +++K E TP S Sbjct: 133 PSPSPSNRIVVIKEAIGVCAAITPWNFPAAMITRKAGPALAAGCPMVLKPAEATPFSALA 192 Query: 186 LIRAFADAGIPDGVVNLVYGVPSEISEYLIPHPIIKKISFTGSTPVGKQLAALAGTHMKR 245 L AGIP GV ++V G P I + +PI++KISFTGST VGK L + + +K+ Sbjct: 193 LAVLAERAGIPAGVFSVVTGTPKGIGGEMTSNPIVRKISFTGSTGVGKLLMQQSASSIKK 252 Query: 246 ATMELGGHAPAIVFDDADIDAAAKQLAMAKFRNAGQVCVSPTRFLVQKNVFDAFVDKFIT 305 ++ELGG+AP IVFDDAD+DAA + +K+RNAGQ CV R VQ V+DAF K + Sbjct: 253 LSLELGGNAPFIVFDDADLDAAVEGAIASKYRNAGQTCVCANRIYVQDGVYDAFAAKLVE 312 Query: 306 AASQLKVGDGTVAGTTMGPVANKRRIAALEALISDAVEQGAQLRFGGKRVGDKGYFFEPT 365 A + KVG GT G T GP+ N++ + +E ++DAV +GA++ GGKR FFEPT Sbjct: 313 AVKKFKVGQGTEEGVTQGPLINEQAVQKVEQHVADAVAKGARVLLGGKRHALGHSFFEPT 372 Query: 366 VLTNVPSA 373 VL +V A Sbjct: 373 VLADVTPA 380 >gi|300310458|ref|YP_003774550.1| NADP-dependent succinate-semialdehyde dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 493 Score = 262 bits (669), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 160/373 (42%), Positives = 227/373 (60%), Gaps = 7/373 (1%) Query: 8 FINGRWTASVSDRTIPVVNPATEEVIGHIAHANKQDLDAALDAAQKGFDTWRKTSAFERS 67 I W + R + V +PAT +V + D AA++AA F WR T A +R+ Sbjct: 17 LIGADWRGAADGRQLDVSDPATGQVFASVPDGGAADARAAVEAAVAAFAAWRATPAKQRA 76 Query: 68 KIMRKAANILRERADEVALLMTLEQGKPLAEAKAETLGAADTIDWFAEEARRTYGRLVPA 127 I+++ ++L D++ L++ EQGKPLAEAK E AA ++WF EEA R G ++PA Sbjct: 77 GIIKRWNDLLLAHQDDLGRLISREQGKPLAEAKGEVAYAASYVEWFGEEATRANGDIIPA 136 Query: 128 RVPNAYQMVIKEPVGPVAAFTPWNFPLNQVVRKLSAALAAGCSIIVKAPEETPASPAELI 187 V M +KEPVG VAA TPWNFP + RK++ ALAAGC+++ K E+TP + L+ Sbjct: 137 PVTGRRMMALKEPVGVVAAITPWNFPAAMIARKIAPALAAGCTVVCKPAEDTPLTSLALV 196 Query: 188 RAFADAGIPDGVVNLVYGVPS---EISEYLIPHPIIKKISFTGSTPVGKQLAALAGTHMK 244 R +AG+P GV+N+V E+ + + ++KISFTGST VGK LA + +K Sbjct: 197 RLAQEAGVPVGVINIVTASRERTPEVVDVWLADGRVRKISFTGSTAVGKHLARHSADTLK 256 Query: 245 RATMELGGHAPAIVFDDADIDAAAKQLAMAKFRNAGQVCVSPTRFLVQKNVFDAFVDKFI 304 + ++ELGG+AP IVFDDAD+DAA + AKFRN GQ CVSP R VQ+ V+DAFVDK Sbjct: 257 KLSLELGGNAPFIVFDDADVDAAIDGVMAAKFRNGGQTCVSPNRIYVQEKVYDAFVDKLG 316 Query: 305 TAASQLKVGDGTVAGTTMGPVANKRRIAALEALISDAVEQGAQLRFGGKRVGDKGY---- 360 + LKVG T + +GP+ N R IA ++ + DA+ +GA++ GGKR+ G+ Sbjct: 317 ARVAALKVGPATDPASQIGPMINARAIAKIDQHVRDAIARGARVITGGKRLQGPGFGSDN 376 Query: 361 FFEPTVLTNVPSA 373 ++ PTVL +V A Sbjct: 377 YYAPTVLADVTGA 389 >gi|300310471|ref|YP_003774563.1| NAD-dependent betaine aldehyde dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 486 Score = 219 bits (558), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 129/370 (34%), Positives = 193/370 (52%), Gaps = 11/370 (2%) Query: 6 QLFINGRWTASVSDRTIPVVNPATEEVIGHIAHANKQDLDAALDAAQKGFDTWRKTSAFE 65 +I+G+W VV PATEE + IA N D+D A+ AA++ W TS E Sbjct: 17 HFYIDGKWQPPQGSERAAVVAPATEERVCEIALGNAADVDQAVQAARRAIPAWAATSPLE 76 Query: 66 RSKIMRKAANILRERADEVALLMTLEQGKPLAEAKAETLGAADTIDWFAEEARRTYGRLV 125 R+ ++ + +L ER++ A +TLE G P++ A+ + A AE R L Sbjct: 77 RAALLGRVHALLLERSELFAQALTLEMGAPISYARTAHVPLA------AEHLRVARDNLA 130 Query: 126 --PARVPNAYQMVIKEPVGPVAAFTPWNFPLNQVVRKLSAALAAGCSIIVKAPEETPASP 183 P P +++EP+G A TPWN+P+ Q+ K+ ALAAGC++++K E +P S Sbjct: 131 DYPFIRPRGTTAIVREPIGVCALITPWNWPIYQITAKVGPALAAGCTVVLKPSELSPLSA 190 Query: 184 AELIRAFADAGIPDGVVNLVYGVPSEISEYLIPHPIIKKISFTGSTPVGKQLAALAGTHM 243 +AG+P GV NLV G +E+ L HP + IS TGST G +A A + Sbjct: 191 LLFAEIVHEAGVPAGVFNLVNGSGAEVGAALSAHPQVDMISITGSTRAGVLVAQAAAVTV 250 Query: 244 KRATMELGGHAPAIVFDDADIDAAAKQLAMAKFRNAGQVCVSPTRFLVQKNVFDAFVDKF 303 KR ELGG +P +V DAD++ A A RN GQ C +PTR +V + + Sbjct: 251 KRVAQELGGKSPNLVLPDADLERAIPPGVAAALRNMGQSCSAPTRLIVPRAALARVHELA 310 Query: 304 ITAASQLKVGDGTVAGTTMGPVANKRRIAALEALISDAVEQGAQLRFGGKRVGD---KGY 360 + +Q+KVGD A TT GP+AN+ + ++ +I ++ GA+L GG D +GY Sbjct: 311 LATLAQMKVGDPNDAATTHGPLANRAQFLRVQQMIEAGLQDGARLLAGGPGRPDGLAQGY 370 Query: 361 FFEPTVLTNV 370 + PT+ + V Sbjct: 371 YARPTIFSEV 380 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.133 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,126,765 Number of extensions: 45375 Number of successful extensions: 226 Number of sequences better than 1.0e-08: 20 Number of HSP's gapped: 192 Number of HSP's successfully gapped: 21 Length of query: 385 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 298 Effective length of database: 1,207,925 Effective search space: 359961650 Effective search space used: 359961650 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)