BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0122.0029.p
         (207 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310769|ref|YP_003774861.1| DNA-3-methyladenine glycosylase...   308   2e-85

>gi|300310769|ref|YP_003774861.1| DNA-3-methyladenine glycosylase I
           [Herbaspirillum seropedicae SmR1]
          Length = 189

 Score =  308 bits (788), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 139/186 (74%), Positives = 165/186 (88%)

Query: 16  SVQRCAWVNLDNPRYVTYHDEEWGVPCHDETRLFEMLNLEGAQAGLSWETVLNKRETYRA 75
           ++ RC WVNL NPRY+ YHD EWGVPCHDETRLFEMLNLEGAQAGLSWETVLNKRE+YRA
Sbjct: 4   TLTRCGWVNLANPRYIDYHDHEWGVPCHDETRLFEMLNLEGAQAGLSWETVLNKRESYRA 63

Query: 76  AFDQWNPEKIARYTDAKVAKLLADPGIIRNRLKVAATITNAQSYLRLRDDVGGLAPFLWA 135
           AFD W+ EKIARY + KVA+LLADPGI+RNRLKVAATI NA++YL+LR+++GGL  +LWA
Sbjct: 64  AFDGWDAEKIARYDERKVAQLLADPGIVRNRLKVAATIGNARAYLKLREEIGGLDAYLWA 123

Query: 136 YVDGKPIRNKWKNLSDAPAKTALSDQVSKDLLKRGFKFVGSTIIYAYLQGIGIIDDHVVG 195
           +VDG+ I N+W +L++ PAKT LSD +SKDL +RGFKFVGSTIIYAYLQG+G+I+DHV  
Sbjct: 124 HVDGQAIVNRWASLAECPAKTPLSDAISKDLARRGFKFVGSTIIYAYLQGVGVINDHVQD 183

Query: 196 CHCHGR 201
           CHCHGR
Sbjct: 184 CHCHGR 189


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 665,649
Number of extensions: 26032
Number of successful extensions: 74
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 1
Length of query: 207
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,236,335
Effective search space: 155778210
Effective search space used: 155778210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)