BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0122.0021.p
         (240 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310765|ref|YP_003774857.1| Zn-dependent protease (chaperon...   408   e-115

>gi|300310765|ref|YP_003774857.1| Zn-dependent protease (chaperone
           function) transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 426

 Score =  408 bits (1048), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/235 (90%), Positives = 222/235 (94%)

Query: 5   FQLLMLVLYPTVIAPLFNKFTPLDDDSLRARIESLMQRVGFASKGLFVMDGSKRSAHGNA 64
           FQLLMLV+YP+ IAPLFNKFT L+DDSLR+RIE LMQRVGFASKGLFVMDGSKRSAHGNA
Sbjct: 189 FQLLMLVIYPSFIAPLFNKFTALEDDSLRSRIEGLMQRVGFASKGLFVMDGSKRSAHGNA 248

Query: 65  YFSGFGAGKRIVFFDTLLARLAPHEIEAVLAHELGHFKLKHIVKRIGVMFAISLAFLALL 124
           YFSGFG+GKRIVFFDTLLARLAPHEIEAVLAHELGHFKLKHIVKR+ VMFA+SLAFLALL
Sbjct: 249 YFSGFGSGKRIVFFDTLLARLAPHEIEAVLAHELGHFKLKHIVKRVVVMFAMSLAFLALL 308

Query: 125 GYLKGQAWFYTGLGVNPLLFGNNDAMALILFMLALPIFTFLLSPLSSLSSRKHEFEADAF 184
           GYLK QAWFYTGLGV PLL G+NDAMALILFML LPIFTFLLSPLSSLSSRKHEFEADAF
Sbjct: 309 GYLKQQAWFYTGLGVEPLLMGSNDAMALILFMLVLPIFTFLLSPLSSLSSRKHEFEADAF 368

Query: 185 AARHTNAQDLVSALVKLYEDNASTLTPDPLHSAFYDSHPPASLRIGKLHDTLNAA 239
           AA+HT AQDLVSALVKLYEDNASTLTPDPLHSAFYDSHPPASLRI +LH  L AA
Sbjct: 369 AAQHTQAQDLVSALVKLYEDNASTLTPDPLHSAFYDSHPPASLRIRRLHGALAAA 423


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.140    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 724,745
Number of extensions: 28160
Number of successful extensions: 147
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 157
Effective length of database: 1,226,865
Effective search space: 192617805
Effective search space used: 192617805
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)