BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0122.0020.p (280 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310762|ref|YP_003774854.1| outer membrane ferric sideropho... 160 7e-41 gi|300309529|ref|YP_003773621.1| TonB dependent ferrisiderophore... 74 1e-14 gi|300312552|ref|YP_003776644.1| TonB-dependent outer membrane i... 70 3e-13 gi|300310859|ref|YP_003774951.1| TonB-dependent siderophore rece... 68 6e-13 gi|300312551|ref|YP_003776643.1| ferrisiderophore receptor prote... 66 3e-12 >gi|300310762|ref|YP_003774854.1| outer membrane ferric siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 717 Score = 160 bits (406), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 83/160 (51%), Positives = 108/160 (67%), Gaps = 8/160 (5%) Query: 55 ALNPRLGVVWSPLAAHSFYASYSKNFIPPGGADTISLSTASAGSNVNALDPQFSRQLEAG 114 AL+PR+GVVW L Y S+SKNF P GG D I + T A N N L PQFSRQ+EAG Sbjct: 478 ALSPRIGVVWEALPGQHAYLSWSKNFAPVGG-DVIGI-TPDARGNFNDLKPQFSRQVEAG 535 Query: 115 VKSEWFDKKISTTLAVFQLDLYNRRTQVSSSPDLFVLTGLERNRGVELGINGQLATDWFI 174 +KSEW D+++STTLA FQL+L+NR P F +GLERNRG+EL + G+LA WF+ Sbjct: 536 IKSEWLDRRLSTTLAWFQLELFNRNVADPVRPGFFEQSGLERNRGIELSVEGELAAPWFV 595 Query: 175 RSGFSVQKARIVEAKSCAACGVNVQGKRSAGVSSANGSLF 214 R+G+++Q A+IV+A+ GKR++GVS GSLF Sbjct: 596 RAGWAIQSAKIVQAEP------KFVGKRASGVSGRGGSLF 629 >gi|300309529|ref|YP_003773621.1| TonB dependent ferrisiderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 704 Score = 73.9 bits (180), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 90/161 (55%), Gaps = 10/161 (6%) Query: 54 TALNPRLGVVWSPLAAHSFYASYSKNFIPPGGADTISLSTASAGSNVNALDPQFSRQLEA 113 TA++PR G+VW P S+Y S+S++F P G ++ +L+T +A L P+ +R EA Sbjct: 464 TAVSPRAGLVWQPSLTQSYYLSWSRSFQPSG--ESFALATNNAD-----LAPEQTRNTEA 516 Query: 114 GVKSEWFDKKISTTLAVFQLDLYNRRTQVSSSPDLFVLTGLERNRGVELGINGQLATDWF 173 G K ++++ + S T++VF+L+ N ++ + + + + G +R G EL + L W Sbjct: 517 GAKYDFWEGRASATVSVFRLERDNIKSALPNG--VVIPVGKQRTDGAELSFSADLKQGWK 574 Query: 174 IRSGFSVQKARIVEAKSCAACGVNVQGKRSAGVSSANGSLF 214 + +G++ A I E+ S GV +GK + +G+L+ Sbjct: 575 LLAGYAWLNAVITESSSF-DNGVPFKGKNATLTPRHSGNLW 614 >gi|300312552|ref|YP_003776644.1| TonB-dependent outer membrane iron monomeric catechols receptor protein [Herbaspirillum seropedicae SmR1] Length = 799 Score = 69.7 bits (169), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 75/143 (52%), Gaps = 2/143 (1%) Query: 56 LNPRLGVVWSPLAAHSFYASYSKNFIPPGGADTISLSTASAGSNVNALDPQFSRQLEAGV 115 LN +L ++ P S YA Y+ + PPGG+ ++ S+ N DPQ ++ E G Sbjct: 552 LNWKLAGIYKPTDYSSLYALYATSQQPPGGSSFSLSASNSSADNPK-FDPQKAKTAELGT 610 Query: 116 KSEWFDKKISTTLAVFQLDLYNRRTQVSSSPDLFVLTGLERNRGVELGINGQLATDWFIR 175 K + +KK++ T A+++ ++ N Q ++S F TG + +GVELG+ G++ D + Sbjct: 611 KWDLLNKKLALTAALYRTEITNEVEQDATSGQYFQ-TGKKTVQGVELGVTGEVTPDLSLT 669 Query: 176 SGFSVQKARIVEAKSCAACGVNV 198 +G++ K ++ A G N Sbjct: 670 AGYTYMKTKVDSGAIVTASGENT 692 >gi|300310859|ref|YP_003774951.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 705 Score = 68.2 bits (165), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 75/169 (44%), Gaps = 16/169 (9%) Query: 55 ALNPRLGVVWSPLAAHSFYASYSKNFIPPGGADTISLSTASAGSNVNALDPQFSRQLEAG 114 A +PRLG+ + + S Y S SK+F P G+D NA P+ SR EAG Sbjct: 469 AYSPRLGLTYLLTPSWSVYVSASKSFRPNSGSDVSG----------NAFSPETSRAAEAG 518 Query: 115 VKSEWFDKKISTTLAVFQLDLYNRRTQVSSSPDLFVLTGLERNRGVELGINGQLATDWFI 174 +K + DK+ TLAVF + N T ++P+ + G R++GVEL N +L W + Sbjct: 519 LKFQSEDKRSGATLAVFDITKQNVLTTDPANPNFSIAAGEVRSKGVELDANARLGHHWRV 578 Query: 175 RSGFSVQKARIVEAKSCAACGVNVQGKRSAGVSSANGSLFXFAEGAFQH 223 + A + + G R + ++ SL E A H Sbjct: 579 TGNLAYTDAYVSRDNTLPV------GSRLVNIPRSSASLLAVFEDADAH 621 >gi|300312551|ref|YP_003776643.1| ferrisiderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 755 Score = 65.9 bits (159), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 76/142 (53%), Gaps = 2/142 (1%) Query: 56 LNPRLGVVWSPLAAHSFYASYSKNFIPPGGADTISLSTASAGSNVNALDPQFSRQLEAGV 115 N ++ VV+ P + S YA Y+ PPGGA+ +LS + + ++ PQ + E G Sbjct: 508 FNAKVAVVFKPTSYSSLYALYASAQQPPGGAN-FNLSASRSNASHTDYAPQKTDTGEIGT 566 Query: 116 KSEWFDKKISTTLAVFQLDLYNRRTQVSSSPDLFVLTGLERNRGVELGINGQLATDWFIR 175 K E D+K+ T A+++ ++ N ++ S + + TG + +G+ELG+ G L+ + Sbjct: 567 KWELLDRKLIATAALYRTEV-NNEVELDSLTNTYFQTGKKITQGLELGVTGDLSPTVSLT 625 Query: 176 SGFSVQKARIVEAKSCAACGVN 197 +G+S ++++ +A G N Sbjct: 626 AGYSHMQSQVSRGALVSATGEN 647 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.132 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 905,867 Number of extensions: 36394 Number of successful extensions: 137 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 127 Number of HSP's successfully gapped: 10 Length of query: 280 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 196 Effective length of database: 1,222,130 Effective search space: 239537480 Effective search space used: 239537480 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)