BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0122.0019.p (317 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310762|ref|YP_003774854.1| outer membrane ferric sideropho... 282 2e-77 gi|300309529|ref|YP_003773621.1| TonB dependent ferrisiderophore... 147 1e-36 gi|300310859|ref|YP_003774951.1| TonB-dependent siderophore rece... 112 5e-26 gi|300312681|ref|YP_003776773.1| TonB-dependent siderophore rece... 104 8e-24 gi|300311660|ref|YP_003775752.1| TonB-dependent receptor protein... 103 2e-23 >gi|300310762|ref|YP_003774854.1| outer membrane ferric siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 717 Score = 282 bits (722), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 136/218 (62%), Positives = 169/218 (77%) Query: 38 ANLPAIEIRSKRSHYDPRPASVHTATRTDADVRDIPQTVNSIRVDDVASYGGQTLADALS 97 ++LP +E+R +R DPR V TATR+ AD ++PQ++ S+ V+ V+ YG +TLA AL Sbjct: 46 SSLPVVEVRDQRRSPDPRARRVGTATRSAADPMEVPQSIQSVSVEQVSVYGARTLAGALL 105 Query: 98 GVPGISNTSDTRFDSFRIRGFAGAGDVFLDGVRDDAQYVRSLGNIERVEVLKGPAAVLYG 157 GVPGIS+ SDTRFD+FRIRGF+ A D+ LDG+RDD QYVR LGNIERVEVL+GPA+VLYG Sbjct: 106 GVPGISSISDTRFDAFRIRGFSSANDLLLDGMRDDPQYVRGLGNIERVEVLRGPASVLYG 165 Query: 158 RGSGGGVINRISKQPGHDVQSSVRAVAGSYGRIGAAADVNQVLSAEWAMRINAGRDHAGS 217 RGSGGGVINRISKQPG DV S GS G +GAA D N+ L+ WA+RIN GR+HAGS Sbjct: 166 RGSGGGVINRISKQPGQDVASQATLSLGSAGLLGAALDWNRPLAPHWALRINTGREHAGS 225 Query: 218 FRNGVDSTRQYLAPSIKWDNQRTSWLLQLEQGEFERVP 255 FR+ V+ TRQY AP++KW++ R SWLLQ E E+ERVP Sbjct: 226 FRDTVNGTRQYFAPALKWESGRDSWLLQAEYDEYERVP 263 >gi|300309529|ref|YP_003773621.1| TonB dependent ferrisiderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 704 Score = 147 bits (371), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 110/310 (35%), Positives = 152/310 (49%), Gaps = 26/310 (8%) Query: 8 LRLRPLAIAV---CSLAS-GFDHACAADSVGSDVANLPAIEIRSKRSHYDPRPASVHTAT 63 RL PL +AV CSL+ ACA D LPAIE+ R++ + + T Sbjct: 3 FRLSPLRLAVLATCSLSPLAILPACAQ----QDTTALPAIEVSGARANDGYVAPTAVSGT 58 Query: 64 RTDADVRDIPQTVNSIRVDDVASYGGQTLADALSGVPGIS-NTSDTRFDSFRIRGFAGAG 122 +++A +RD+PQT+N + + +L D L VPG+ +T D + D IRGF G Sbjct: 59 KSEAPLRDVPQTINVVPAQVIRDQNASSLQDVLKNVPGLGLSTGDGQRDQVFIRGFTAIG 118 Query: 123 DVFLDGVRDDAQYVRSLGNIERVEVLKGPAAVLYGRGSGGGVINRISKQPGHDVQSSVRA 182 D F+DG RDDA Y R L N+E VEV+KGPAAVLYGRGS GG+INR++K+PG DV S V Sbjct: 119 DQFVDGFRDDALYFRDLSNVESVEVIKGPAAVLYGRGSSGGLINRVTKKPGVDV-SDVSF 177 Query: 183 VAGSYGRIGAAADVNQVLSAEWAMRINAGRDHAGSFRNGVDSTRQYLAPSIKWD-NQRTS 241 A S A D+ + + R+ + SFR R +APS+ + T Sbjct: 178 TANSTAGRRAELDLGRAGEGALSWRLTGAVERGDSFRAQQFIDRTAIAPSVALRFSADTK 237 Query: 242 WLLQLEQGEFERVPXISCRRPLGPRPMARSAATSSRTPAPTSVRRSNTSSMRNGRSATYS 301 LLQ++ E R+ P R P V T RN R A + Sbjct: 238 LLLQMDYLEDRRMMDFGI-----PSYRGR----------PVDVDPGTTYGARNARDADFV 282 Query: 302 ASSISTAAST 311 S +++ +T Sbjct: 283 QSRVASTTAT 292 >gi|300310859|ref|YP_003774951.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 705 Score = 112 bits (279), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 80/255 (31%), Positives = 129/255 (50%), Gaps = 16/255 (6%) Query: 10 LRPLAIAVCSLASGFDHACAADSVGSDVANLPAIEIRSKRSHYDPRPASVHTATRTDADV 69 LR + +L + AAD+ G +L I + + R +S +ATRT+ + Sbjct: 6 LRAAVLGALALGQTPSVSWAADAAGKQEGDLGEIVVTGQGERQQYRQSSTSSATRTETPL 65 Query: 70 RDIPQTVNSIR---VDDVASYGGQTLADALSGVPGIS--NTSDTRFDSFRIRGFAGAGD- 123 +++PQ+V + +DD+A+ L D L V G++ N +D++ IRGF+G+ + Sbjct: 66 QELPQSVQVVSRQLIDDLAA---TRLDDVLLYVSGVARQNNFGGLWDNYSIRGFSGSENG 122 Query: 124 ---VFLDGVRDDAQYV--RSLGNIERVEVLKGPAAVLYGRGSGGGVINRISKQPGHDVQS 178 + +G + Y R + N+E V+ LKGPAA LYG GG IN ++K+P + Sbjct: 123 GMNILWNGFASNRGYAPPRDMANVESVDFLKGPAAALYGNSEPGGTINVVTKKPQFKSAN 182 Query: 179 SVRAVAGSYGRIGAAADVNQVLSAEWAMRINAGRDHAGSFRNGVDSTRQYLAPSIKWDNQ 238 ++ GS +A D LS+ A R+NA +H GS R+ V S R++ AP+ W Sbjct: 183 ALDLSIGSNDAYRSAVDSTGALSSTVAYRLNAAMEHKGSMRDQVRSEREFFAPAFTWLLT 242 Query: 239 RTSWLLQLEQGEFER 253 + +L E GEF R Sbjct: 243 ENT-ILNYE-GEFLR 255 >gi|300312681|ref|YP_003776773.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 738 Score = 104 bits (260), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 70/201 (34%), Positives = 108/201 (53%), Gaps = 9/201 (4%) Query: 40 LPAIEIRSKRSHYDPRPASVHTA-TRTDADVRDIPQTVNSIRVDDVASYGGQTLADALSG 98 L + ++ +R + AS TA T+ AD+RD+PQ+V + + S G +L+DAL Sbjct: 42 LAPVTVQGQRDDF----ASTGTALTKLPADLRDVPQSVTVVNKAQMQSQGASSLSDALRN 97 Query: 99 VPGIS---NTSDTRFDSFRIRGFAGAGDVFLDGVRDDAQYVRSLGNIERVEVLKGPAAVL 155 V GI+ ++ + GF+ D++LDG RD QY R I+ VEVL GP+++L Sbjct: 98 VSGITLGGAEGGQIGNNINLNGFSARTDIYLDGFRDRGQYYRDTFAIDEVEVLMGPSSML 157 Query: 156 YGRGSGGGVINRISKQPGHDVQSSVRAVAGSYGRIGAAADVNQVLSAEWAMRINA-GRDH 214 +GRGS GG+IN++SK+ + + + G + + DVN+ LS A+RI A ++ Sbjct: 158 FGRGSTGGIINQVSKKANLKAATEISGSITTNGLVRSTVDVNRPLSDTSALRIEAMAQNG 217 Query: 215 AGSFRNGVDSTRQYLAPSIKW 235 A S R D LA S W Sbjct: 218 AASTRKQTDVQDFGLAGSYVW 238 >gi|300311660|ref|YP_003775752.1| TonB-dependent receptor protein [Herbaspirillum seropedicae SmR1] Length = 705 Score = 103 bits (256), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 75/220 (34%), Positives = 116/220 (52%), Gaps = 27/220 (12%) Query: 40 LPAIEIRSK--------RSHYDPRPASVHTATRTDADVRDIPQTVNSIRVDDVASYGGQT 91 LP +EI++ + R AS AT+TD V ++PQ+V+ + D++ + G + Sbjct: 31 LPQVEIKADAETANGPVNGYVAKRTAS---ATKTDTPVLEVPQSVSVVTRDEMDARGVTS 87 Query: 92 LADALSGVPGISNTS---DTR-FDSFRIRGFAGAGDV--FLDGVRD----DAQYVRSLGN 141 L D L +PG ++ + D R ++ F +RGF A FL+G+R Q+ Sbjct: 88 LLDVLRYMPGANSETHGVDPRGYEYFNLRGFINAQVTSNFLNGLRQIPGGFGQFRTETYG 147 Query: 142 IERVEVLKGPAAVLYGRGSGGGVINRISKQPGHDVQSSVRAVAGSYGRIGAAADVN-QVL 200 +ER+EVL+GP +V +G+ GGVINR+SK PG D+ + + GS+ R AD+N Sbjct: 148 MERIEVLRGPGSVTFGQADPGGVINRVSKLPGMDIPNELGVDIGSFNRKQVVADLNGHTQ 207 Query: 201 SAEWAMR-INAGRD--HAGSFRNGV--DSTRQYLAPSIKW 235 E+ R + G D + F NG D+ R YLAPS+ W Sbjct: 208 DGEYLWRVVGLGLDSNNQYKFNNGQSGDNNRFYLAPSLTW 247 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.129 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 872,844 Number of extensions: 37709 Number of successful extensions: 166 Number of sequences better than 1.0e-08: 16 Number of HSP's gapped: 150 Number of HSP's successfully gapped: 16 Length of query: 317 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 232 Effective length of database: 1,217,395 Effective search space: 282435640 Effective search space used: 282435640 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)