BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0122.0016.p
         (350 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310760|ref|YP_003774852.1| argininosuccinate synthase [Her...   676   0.0  

>gi|300310760|ref|YP_003774852.1| argininosuccinate synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 444

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/347 (93%), Positives = 338/347 (97%)

Query: 1   VTYFNTTPLGRAVTGTMLVAAMREDNVDIWGDGSTFKGNDIERFYRYGLLVNPNLRIYKP 60
           +TYFNTTPLGRAVTGTMLV+AMREDNVDIWGDGST+KGNDIERFYRYGLLVNPNL+IYKP
Sbjct: 97  ITYFNTTPLGRAVTGTMLVSAMREDNVDIWGDGSTYKGNDIERFYRYGLLVNPNLKIYKP 156

Query: 61  WLDNTFIDELGGRKEMSEFMIKSGFDYKMSVEKAYSTDSNMLGATHEAKDLEFLNSGIKI 120
           WLD+TFIDELGGRKEMSEFMIKSGFDYKMSVEKAYSTDSNMLGATHEAKDLEFLNSGIKI
Sbjct: 157 WLDSTFIDELGGRKEMSEFMIKSGFDYKMSVEKAYSTDSNMLGATHEAKDLEFLNSGIKI 216

Query: 121 VQPIMGVAFWRDDVEVKAETVTVRFEEGRPVALNGKTFDSMTDLILEANRIGGRHGLGMS 180
           VQPIMGVAFWRDDVEVKAETVTVRFEEGRPVALNGKTF SMT+LILEANRIGGRHGLGMS
Sbjct: 217 VQPIMGVAFWRDDVEVKAETVTVRFEEGRPVALNGKTFASMTELILEANRIGGRHGLGMS 276

Query: 181 DQIENRIIEAKSRGIYEAPGLALLFIAYERLITGIHNEDTIEQYRDNGRKLGRLLYQGRW 240
           DQIENRIIEAKSRGIYEAPGLALLFIAYERL+TGIHNEDTIEQYRDNGRKLGRLLYQGRW
Sbjct: 277 DQIENRIIEAKSRGIYEAPGLALLFIAYERLVTGIHNEDTIEQYRDNGRKLGRLLYQGRW 336

Query: 241 FDSQAIMLRETAQRWVARAITGEVTVELRRGNDYSILNTESANLTYQPERLTMEKGEGAF 300
           FDSQAIMLRETAQRWVARAITGEVTVELRRGNDYSILNTES NLTY PERLTMEKGEG+F
Sbjct: 337 FDSQAIMLRETAQRWVARAITGEVTVELRRGNDYSILNTESPNLTYHPERLTMEKGEGSF 396

Query: 301 TPQDRIGQLTMRNLDIVDTRQKLAIYQSTGLLATSNAVSLPLLEKDK 347
           +  DRIGQLTMRNLDI DTRQKLAIYQ+TGLL +S AVSLPLL KD+
Sbjct: 397 SAIDRIGQLTMRNLDIADTRQKLAIYQNTGLLESSTAVSLPLLGKDE 443


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.136    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,067,278
Number of extensions: 44655
Number of successful extensions: 106
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 264
Effective length of database: 1,212,660
Effective search space: 320142240
Effective search space used: 320142240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)