BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0122.0013.p
         (91 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310757|ref|YP_003774849.1| hypothetical protein Hsero_1425...   114   1e-27

>gi|300310757|ref|YP_003774849.1| hypothetical protein Hsero_1425
          [Herbaspirillum seropedicae SmR1]
          Length = 161

 Score =  114 bits (285), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 55/62 (88%), Positives = 58/62 (93%)

Query: 1  MPSFDTVSEANLVEVKNANDQANKEITTRFDFKGSDARVELKERELTAYADSEFQLSQVT 60
          MPSFDTV EANLVEVKNA DQANKEI+TRFDFKG+DARVE KERELTAYADS+FQLSQV 
Sbjct: 1  MPSFDTVCEANLVEVKNAVDQANKEISTRFDFKGTDARVEQKERELTAYADSDFQLSQVR 60

Query: 61 DV 62
          DV
Sbjct: 61 DV 62


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.305    0.116    0.295 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 161,345
Number of extensions: 4104
Number of successful extensions: 13
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 91
Length of database: 1,619,870
Length adjustment: 61
Effective length of query: 30
Effective length of database: 1,331,035
Effective search space: 39931050
Effective search space used: 39931050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 123 (52.0 bits)