BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0122.0011.p
         (164 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311051|ref|YP_003775143.1| hypothetical protein Hsero_1722...   152   9e-39

>gi|300311051|ref|YP_003775143.1| hypothetical protein Hsero_1722
           [Herbaspirillum seropedicae SmR1]
          Length = 179

 Score =  152 bits (385), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 77/155 (49%), Positives = 103/155 (66%), Gaps = 4/155 (2%)

Query: 9   AIPDGMHTLTPHLVCAGAAQAIEFYKQAFGAIELARLPGPDGKLMHAMVRIGDSSLMLVD 68
           A+P G H++TP+L+   +A+AI FY++AF A+E+ RL GP GK+ HA ++IGD+ +ML D
Sbjct: 22  ALPAGYHSVTPYLIVHASAEAIAFYQRAFDAVEIMRLDGPHGKIWHAELQIGDARIMLAD 81

Query: 69  EMPEWGSRGPHLLGGSPVTIHLYVEDADAVFAQAQSAGATVKLPLSDMFWGDRYGQLEDP 128
           E PE G   P  LGG+ V++ +YV D DAVF QA +AGA    P+   F+GDR G L DP
Sbjct: 82  EHPELGFFSPQTLGGAGVSLLIYVADVDAVFNQALAAGAVQLRPVQHQFYGDRSGTLRDP 141

Query: 129 FGHRWSIATHQRDLSPAEI----KEGMDNMSKEQK 159
           FGH WSIATH  DLS  EI    +E +    K+Q 
Sbjct: 142 FGHVWSIATHIEDLSTEEICARSRELLARRCKKQS 176


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 584,869
Number of extensions: 24855
Number of successful extensions: 70
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 86
Effective length of database: 1,250,540
Effective search space: 107546440
Effective search space used: 107546440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)