BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0122.0003.p
         (296 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310753|ref|YP_003774845.1| transmembrane protein [Herbaspi...   445   e-126

>gi|300310753|ref|YP_003774845.1| transmembrane protein
            [Herbaspirillum seropedicae SmR1]
          Length = 1439

 Score =  445 bits (1145), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 211/280 (75%), Positives = 247/280 (88%)

Query: 4    AAAADSTNSASRIPALDIVAEDFRLFGKKLGRLELNANNVRVSVGSEWRINKLTLINPDA 63
            AA   S +   ++PALDI AE F L GKKLGRLEL+A+N+  SVG EWRI++L L NPDA
Sbjct: 1096 AATVASEDDKVQMPALDIRAEQFELGGKKLGRLELDASNMVTSVGREWRISRLLLANPDA 1155

Query: 64   ELRAAGNWMAFGRNNTSNLTYALDINDAGKLLERFGFVGVVRGGKGKLDGDVSWKGLPYS 123
            + RAAGNWM+FG N+TSN TYALDI DAGKLLERFG+ G VRGGKGKLDGD+SWK  PY+
Sbjct: 1156 QFRAAGNWMSFGSNHTSNFTYALDIEDAGKLLERFGYPGTVRGGKGKLDGDLSWKAPPYA 1215

Query: 124  LDIPTLSGQVHMDMHSGQFLKVDPGAAKLLGVLNLQALPRRLVLDFRDVFSEGFAFDNIV 183
            +D+ +L+GQVHMD+H+GQFLKVDPGAAKLLGVLNLQALPRRL LDFRDVFSEGFAFD + 
Sbjct: 1216 MDMASLAGQVHMDVHAGQFLKVDPGAAKLLGVLNLQALPRRLTLDFRDVFSEGFAFDTVA 1275

Query: 184  GTASIAQGVATTDNLKMTGVAASVLMNGSADIARETQNLHLVVIPEVNLGTASLVALAIN 243
            GTASI +G+A+TDNLKMTGV ASVLM+GSADIARETQ+LH+VVIPE+NLGTAS+VA+A+N
Sbjct: 1276 GTASINKGIASTDNLKMTGVTASVLMSGSADIARETQDLHVVVIPEINLGTASVVAMAVN 1335

Query: 244  PVVGVGTYLAQLFLRNPLMKTLTFEYNVTGSWSDPLVVKQ 283
            PVVGV T LAQLFLRNP+MK+L+FEY V+GSWSDP+VVKQ
Sbjct: 1336 PVVGVSTLLAQLFLRNPVMKSLSFEYKVSGSWSDPIVVKQ 1375


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 828,978
Number of extensions: 31704
Number of successful extensions: 94
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 211
Effective length of database: 1,217,395
Effective search space: 256870345
Effective search space used: 256870345
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)