BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0119.0002.p
         (356 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311641|ref|YP_003775733.1| trehalose synthase [Herbaspiril...   501   e-143

>gi|300311641|ref|YP_003775733.1| trehalose synthase [Herbaspirillum
           seropedicae SmR1]
          Length = 1168

 Score =  501 bits (1289), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 248/329 (75%), Positives = 277/329 (84%), Gaps = 7/329 (2%)

Query: 1   VLPPLMDPQYGYQTINVEAQNDDRHSMLNWMRRLLSVRKQHQAFGRGTLKLIYPSNRKIL 60
           VLP LMDPQYGYQTINVEAQ+ DRHSMLNWMRRLL+VRKQHQAFGRG+L L+YPSNRKI 
Sbjct: 465 VLPLLMDPQYGYQTINVEAQSADRHSMLNWMRRLLNVRKQHQAFGRGSLALVYPSNRKIF 524

Query: 61  AYLREYSDPTHDGATETILCVANLSQSAQAVELELSAFADRIPIEMMGGTAFPPIGKLNY 120
           AYLRE++DP   GATETILCVAN+SQSAQAVEL+LSAFA RIPIEMMGG AFPPIG+LNY
Sbjct: 525 AYLREFTDPRPGGATETILCVANVSQSAQAVELDLSAFAGRIPIEMMGGAAFPPIGQLNY 584

Query: 121 LLTLPPFGFYWFLLANEATMPSWYAASPEPLPEYVTLVLRHGVEEIMEEPARGTLEREVL 180
           LLTLPPFGFYWFLLA EA MPSW A +PEPLPEYVTLVLR GV+EIME PAR  LE+EVL
Sbjct: 585 LLTLPPFGFYWFLLAPEANMPSWRAPTPEPLPEYVTLVLRKGVQEIMEPPARKLLEQEVL 644

Query: 181 PHYLLKRRWYAAKQKQLGRVDMVTATELPMSKNVPGNLPILMSEVVAHYDGEEE------ 234
           PHYLLKRRWYA KQ+Q+ +V+M  AT LPMS+  PG LPI+++E+  H  G E       
Sbjct: 645 PHYLLKRRWYAGKQRQIDKVEMREATTLPMSRTRPGALPIVLTEIDVHSSGTEGDAGAGS 704

Query: 235 -QRYLLPLGFIREEDTISALPHQLALSRVRRNRHVGFLTDAFALDSFIMTVLELLAEDAD 293
            QRYLLPLGFIREEDT+SALPHQLALSRVRR R+VGFLTDAFALDSFI+ VLELLA+ A 
Sbjct: 705 VQRYLLPLGFIREEDTVSALPHQLALSRVRRGRNVGFLTDAFALDSFIVAVLELLADSAS 764

Query: 294 VPAGDGHMRFVPTAAFDKAILHAPLQLRR 322
           +    G +R +PTAAFD AIL   L+LRR
Sbjct: 765 IKTRSGQLRCIPTAAFDPAILTTALELRR 793


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,123,081
Number of extensions: 45776
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 270
Effective length of database: 1,212,660
Effective search space: 327418200
Effective search space used: 327418200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)