BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0118.0007.p
         (712 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312801|ref|YP_003776893.1| hypothetical protein Hsero_3506...  1315   0.0  

>gi|300312801|ref|YP_003776893.1| hypothetical protein Hsero_3506
           [Herbaspirillum seropedicae SmR1]
          Length = 736

 Score = 1315 bits (3404), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 639/724 (88%), Positives = 667/724 (92%), Gaps = 21/724 (2%)

Query: 1   MEIKVNFLDKLRLEAKFDDFTVIADQPIRYKGDGSAPGPFDYFLASSALCAAYFVKLYCN 60
           MEIKVNFLDKLRLEAKFDDFTVIADQPIRYKGDGSAPGPFDYFLASSALCAAYFVKLYCN
Sbjct: 1   MEIKVNFLDKLRLEAKFDDFTVIADQPIRYKGDGSAPGPFDYFLASSALCAAYFVKLYCN 60

Query: 61  TRNISTENIRLSQNNIVDPENRYKQIFKIQVELPADIEEADRRGILRSIERCTVKKVVQE 120
           TRNISTENIRLSQNNIVDPENRY+Q FKIQVELPADIEEADRRGILRSIERCTVKKVVQ+
Sbjct: 61  TRNISTENIRLSQNNIVDPENRYQQTFKIQVELPADIEEADRRGILRSIERCTVKKVVQQ 120

Query: 121 GPDFVIEEVESLDADAQSLLTVKPAADASTFILGKDLPLEQTIANMSGLLAGLGIKIEIA 180
           GP+FVIEEVESLDADAQSLLT+KP A  ST ILGKDLPLEQTIANMSGLLA LGIKIEIA
Sbjct: 121 GPEFVIEEVESLDADAQSLLTLKPEAGVSTHILGKDLPLEQTIANMSGLLAELGIKIEIA 180

Query: 181 SWRNIIPNVWSLHIRDAHSPMCFTNGKGATKESALASALGEYIERLSNNHFYAGAFWGED 240
           SWRNIIPNVWSLHIRDAHSPMCFTNGKGATKESALASALGEYIER+SNNHFYAG++WGED
Sbjct: 181 SWRNIIPNVWSLHIRDAHSPMCFTNGKGATKESALASALGEYIERISNNHFYAGSYWGED 240

Query: 241 IADAAFVHYPNERWFKPGRKDALPKEILDDYCLDIYNPDGELRGSHLIDTNSGNVERGIC 300
           IA+A FVHYPNERWFKPGR D LPKEILD YCL IYN DGELR SHL+DTNSGN ERGIC
Sbjct: 241 IANAEFVHYPNERWFKPGRGDKLPKEILDAYCLGIYNADGELRASHLVDTNSGNAERGIC 300

Query: 301 SLPYVRQSDGKVVYFPSNLIENLFVSNGMSAGNTLAEAQVQCLSEIFERAVKREILEGEI 360
           SLPYVRQSDG+VVYFPSNL+ENLFVSNGMSAGNTL EAQVQCLSEIFERAVKREILEGEI
Sbjct: 301 SLPYVRQSDGEVVYFPSNLVENLFVSNGMSAGNTLPEAQVQCLSEIFERAVKREILEGEI 360

Query: 361 ALPDVPQEVLAKYPGILAGIKGLEEQGFPVLVKDASLGGTYPVMCVTLMNPRTGGVFASF 420
            LPDVPQEVLAKYPGI+AGI+GLEEQGFPVLVKDASLGG YPVMCVTLMNPRTGGVFASF
Sbjct: 361 CLPDVPQEVLAKYPGIVAGIQGLEEQGFPVLVKDASLGGVYPVMCVTLMNPRTGGVFASF 420

Query: 421 GAHPSFEVALERSLTELLQGRSFEGLNDLPQPTFESNAVTEPNNFVEHFIDSX------- 473
           GAHPSFEVALERSLTELLQGRSFEGLNDLPQPTFESNAVTEPNNFVEHFIDS        
Sbjct: 421 GAHPSFEVALERSLTELLQGRSFEGLNDLPQPTFESNAVTEPNNFVEHFIDSSGIVSWRF 480

Query: 474 --------------SSHGENANAEEAATLFGILKDMGKETYVAVYDQLGAVACRILVPGY 519
                         SS G++ANAEEAATLF IL+DMGKE YVAVYDQLGA ACRILVPGY
Sbjct: 481 FSAKPHYEFVEWDFSSQGDHANAEEAATLFAILEDMGKEAYVAVYDQLGATACRILVPGY 540

Query: 520 SEVYPVEDLIWDNTNKALLFRADVLNLHRLDDAALEALLERLENSELDEYSDIATLIGIE 579
           SEVYPVEDLIWDNTNKALLFRAD+LNLHRLDD AL ALL+RLEN+ELDEYSDIATLIGI+
Sbjct: 541 SEVYPVEDLIWDNTNKALLFRADILNLHRLDDEALAALLDRLENNELDEYSDIATLIGID 600

Query: 580 FDENTVWGQLTVLELKLLIQLALQQFEEAQELVGAFLQYNDNTVERGLFYQALKVVLEVM 639
           FDENTVWGQLTVLELKLLI LALQQFEEA ELVGAFLQYNDN+VERGLFYQAL VVLEV 
Sbjct: 601 FDENTVWGQLTVLELKLLIHLALQQFEEAHELVGAFLQYNDNSVERGLFYQALNVVLEVE 660

Query: 640 LDDELELDDYAVNFRRMFGDARMDTVMGSVDGSVRFFGLTPTSMQLEGLDRHHRLIDSYR 699
           LD+EL L+DY  NFRRMFG+ RMD  +GS+ GSVRFFGLTPTSM+LEGLDRH RL+DSYR
Sbjct: 661 LDEELALEDYETNFRRMFGNERMDAAIGSITGSVRFFGLTPTSMKLEGLDRHQRLLDSYR 720

Query: 700 KLHK 703
           KLHK
Sbjct: 721 KLHK 724


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.137    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,040,344
Number of extensions: 82794
Number of successful extensions: 204
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 1
Length of query: 712
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 620
Effective length of database: 1,184,250
Effective search space: 734235000
Effective search space used: 734235000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 134 (56.2 bits)