BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0118.0005.p
         (400 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311521|ref|YP_003775613.1| GMP synthase [Herbaspirillum se...   235   4e-63
gi|300311520|ref|YP_003775612.1| inosine-5'-monophosphate dehydr...   224   9e-60

>gi|300311521|ref|YP_003775613.1| GMP synthase [Herbaspirillum
           seropedicae SmR1]
          Length = 530

 Score =  235 bits (600), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 108/121 (89%), Positives = 114/121 (94%)

Query: 1   VFELGVPVLGICYGMQTMAEQLGGKVENGTLREFGYAEVRAHGHTALLKDIADFTTADGH 60
           VFELGVPVLGICYGMQTMAEQLGGKV+NG LREFGYAEVRAHGHT LL +I+DFT A GH
Sbjct: 74  VFELGVPVLGICYGMQTMAEQLGGKVDNGHLREFGYAEVRAHGHTKLLDNISDFTNAQGH 133

Query: 61  GMLKVWMSHGDKVNEMPHGFKLMASTGNCPVAGMADEERRFYAVQFHPEVTHTLQGKALL 120
           GMLKVWMSHGDKVNEMP GFKLMASTGNCP+AGMADEERRFY VQFHPEVTHT+QGKA+L
Sbjct: 134 GMLKVWMSHGDKVNEMPAGFKLMASTGNCPIAGMADEERRFYGVQFHPEVTHTVQGKAML 193

Query: 121 G 121
           G
Sbjct: 194 G 194



 Score =  213 bits (543), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 100/105 (95%), Positives = 103/105 (98%)

Query: 123 DLLRRADAIFIEELRNTKDADGRSWYEKTSQAFAVFLPVKSVGVMGDGRTYEYVVALRAV 182
           DLLRRADAIFIEELRNTKD DG++WYEKTSQAFAVFLPVKSVGVMGDGRTYEYVVALRAV
Sbjct: 421 DLLRRADAIFIEELRNTKDEDGQTWYEKTSQAFAVFLPVKSVGVMGDGRTYEYVVALRAV 480

Query: 183 QTQDFMTAHWAHLPHELLGHVSNRIINEVRGINRVVYDISGKPPA 227
           QTQDFMTAHWAHLPHELLG VSNRIINEVRG+NRVVYDISGKPPA
Sbjct: 481 QTQDFMTAHWAHLPHELLGRVSNRIINEVRGLNRVVYDISGKPPA 525


>gi|300311520|ref|YP_003775612.1| inosine-5'-monophosphate
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 489

 Score =  224 bits (571), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 118/139 (84%), Positives = 129/139 (92%), Gaps = 2/139 (1%)

Query: 227 AISNNAYPLNST--PVIADGGIRFSGDVSKALAAGASSVMMGSMFAGTEEAPGEVILFQG 284
           AI+N A  L  T  PVIADGGIRFSGDV+KALAAGAS+VMMGSMFAGTEEAPGEVIL+QG
Sbjct: 321 AIANVAEALKGTGVPVIADGGIRFSGDVAKALAAGASAVMMGSMFAGTEEAPGEVILYQG 380

Query: 285 RSYKSYRGMGSVGAMTDGSADRYFQDGENNAEKLVPEGIEGRVAYKGSVLAILYQLVGGV 344
           RSYKSYRGMGS+GAM DGSADRYFQDG+N A+K VPEGIEGRVAYKGSV+AILYQLVGGV
Sbjct: 381 RSYKSYRGMGSLGAMADGSADRYFQDGDNTADKFVPEGIEGRVAYKGSVVAILYQLVGGV 440

Query: 345 RSSMGYCGCATIDEFREKA 363
           RSSMGYCGCA+ID+FRE+A
Sbjct: 441 RSSMGYCGCASIDDFRERA 459


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,300,600
Number of extensions: 55003
Number of successful extensions: 163
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 3
Length of query: 400
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 313
Effective length of database: 1,207,925
Effective search space: 378080525
Effective search space used: 378080525
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)