BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0118.0001.p (477 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311516|ref|YP_003775608.1| TPR repeat containing protein [... 299 3e-82 gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [... 255 4e-69 gi|300311388|ref|YP_003775480.1| TPR repeat containing protein [... 224 1e-59 gi|300312352|ref|YP_003776444.1| TPR repeat containing protein [... 201 8e-53 >gi|300311516|ref|YP_003775608.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 528 Score = 299 bits (765), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 181/393 (46%), Positives = 241/393 (61%), Gaps = 10/393 (2%) Query: 81 ALASLDRALEYAPTHQQALNQRGNVLLHLNRHEEAVLCYDRILAQSAADAAAIFNRGNVL 140 ALA+++RAL ++LL LNRHEEA+ CY + A A FN ++L Sbjct: 128 ALAAVERALASGQAGLALHALHADILLRLNRHEEALECYPPAADEDQARALHAFNMADIL 187 Query: 141 QKMNCINQALWCYEQALTLQPNFPEAEMAQSHCLLLQGDFAGGWQHHEARWRTTQLRGQG 200 ++M I QA +EQAL P+FPEAE+ ++H LL Q +A GW+ HEAR+ +L +G Sbjct: 188 RRMGRIEQAQAAFEQALRWHPDFPEAEVGRAHMLLSQQHYAEGWRAHEARFGIAELARRG 247 Query: 201 LFPHEPAWLGEPPLAGRSILLWAEQGLGDTIQFARYIPLIADMAAQVTVCVPETLRRLLA 260 + P W P+ G+ +LLWAEQG GDT+QFARYIPL+A AA+V++C P +L +LA Sbjct: 248 IDSPRPRWRAGEPVRGKRVLLWAEQGQGDTLQFARYIPLVAQQAAEVSLCAPASLLAVLA 307 Query: 261 SLTALPNVTLVSNDKALTPHDFHCPLMSLPLALSWTLATIPAGVPYLHADAELKQQWSAV 320 LP V ++N HD H L+SLPL L PYL A + QQW A Sbjct: 308 P--CLPQVRCMANPGEAPDHDLHASLLSLPLLLGLPDPRQGPPSPYLAAQPQRVQQWQAY 365 Query: 321 LG---PA--PRLRVGLAWAGRQHGELNHTRDIPLSHLRPLAEVEVELVSLQQQIPAGDQA 375 L PA R R+G+AWAGRQ+ ++H+RDIPL L PL + + VSLQ ++PAGDQA Sbjct: 366 LSALWPAMPRRPRLGIAWAGRQYATVHHSRDIPLDALAPLWTLPADFVSLQVEVPAGDQA 425 Query: 376 ELAQW-QRMHRLEAAMTDMAETAALIDNLDLVISADTAVIHLAGALGKPAWLLLRYESEW 434 A QR+H + D A+TAAL+ LDLVIS DTAV+HLAGALG P L LRY+ EW Sbjct: 426 AHATLAQRLH--TPTLVDWADTAALLCALDLVISVDTAVVHLAGALGVPCLLPLRYDGEW 483 Query: 435 RWGWQTGSSRWYPTVKVFRQQHRGDWSGVVEEV 467 RWG + + WYP++++ RQ+ RG W VVEE+ Sbjct: 484 RWGVKGSQTPWYPSLQLLRQRERGQWGPVVEEM 516 >gi|300312874|ref|YP_003776966.1| TPR repeat-containing protein [Herbaspirillum seropedicae SmR1] Length = 603 Score = 255 bits (652), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 168/413 (40%), Positives = 226/413 (54%), Gaps = 21/413 (5%) Query: 76 GRFDEALASLDRALEYAPTHQQALNQRGNVLLHLNRHEEAVLCYDRILAQSAADAAAIFN 135 + D+AL + DRALE P +A++ RG VL + R EA+ YDR LA FN Sbjct: 192 NQLDQALRAYDRALEVQPDFFEAISNRGYVLFKMQRPAEALQAYDRALALDERAPDLWFN 251 Query: 136 RGNVLQKMNCINQALWCYEQALTLQPNFPEAEMAQSHCLLLQGDFAGGWQHHEARWRTTQ 195 RG+ L+++ +A Y +A L+P+ A ++ L QGDF GW+ E RW T Q Sbjct: 252 RGSTLEQLYRFEEASESYRRAKALKPDAGSATWNEALMQLRQGDFVNGWKGFETRWATEQ 311 Query: 196 LRGQGLFPHEPAWLGEPPLAGRSILLWAEQGLGDTIQFARYIPLIADMAAQVTVCVPETL 255 +RGQ +P WLGE PL G++ILL AEQG GDT+QF RY PL+A A+V + V L Sbjct: 312 MRGQQRQFMQPLWLGEQPLEGKTILLHAEQGFGDTLQFVRYAPLLAARGARVILEVQPAL 371 Query: 256 RRLLASLTALPNVT-LVSNDKALT-PHDFHCPLMSLPLAL-SWTLATIPAGVPYLHADAE 312 R LA LP VT ++ D + P DFHCPLMSLPLA +++ A IP PYL +A Sbjct: 372 TRQLA---GLPGVTQVIGTDHFMRPPFDFHCPLMSLPLACKTFSEADIPRA-PYLLPEAS 427 Query: 313 LKQQWSAVLGPAPRLRVGLAWAG---RQHGE---LNHTRDIPLSHLRPLAEVEVELVSLQ 366 W L LRVGL WAG + H + ++ R +P + L PL E+ E +L+ Sbjct: 428 SWAAWHQRLPRNRALRVGLVWAGSSAQTHPDAVRIDGERSLPFATLAPLVELAREHAALE 487 Query: 367 QQIPAGDQAELAQWQRMHRLEA-------AMTDMAETAALIDNLDLVISADTAVIHLAGA 419 Q +AQ H L + + D AET AL+ NLDL+I+ DT+V HLAGA Sbjct: 488 FYSLQVGQDAVAQLH-AHPLASLVRDCSPELHDFAETGALLANLDLLITVDTSVCHLAGA 546 Query: 420 LGKPAWLLLRYESEWRWGWQTGSSRWYPTVKVFRQQHRGDWSGVVEEVAECLR 472 LG+P WLL R+ WRW + S WY + +F Q+ G W V+ V L+ Sbjct: 547 LGRPVWLLNRHNGCWRWQVEREDSPWYGGMTIFGQRTAGQWDEVIARVRAALQ 599 Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 45/111 (40%), Positives = 61/111 (54%) Query: 65 LCEQAALLERLGRFDEALASLDRALEYAPTHQQALNQRGNVLLHLNRHEEAVLCYDRILA 124 L + A L RLGR EALA L+RA AP + A QRGNVL + +A Y+R +A Sbjct: 113 LLARGAALRRLGRNREALADLERATALAPDNADAWFQRGNVLHDSYAYGDARESYERAVA 172 Query: 125 QSAADAAAIFNRGNVLQKMNCINQALWCYEQALTLQPNFPEAEMAQSHCLL 175 A FN GN + N ++QAL Y++AL +QP+F EA + + L Sbjct: 173 LRPDFIEAWFNLGNTCKDGNQLDQALRAYDRALEVQPDFFEAISNRGYVLF 223 Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 41/112 (36%), Positives = 54/112 (48%) Query: 55 LEERPHEAGLLCEQAALLERLGRFDEALASLDRALEYAPTHQQALNQRGNVLLHLNRHEE 114 +E P + A L LGR DEA+A D L +AL RG L L R+ E Sbjct: 69 IELNPDHLDTYFDHAGALAHLGRDDEAVARYDLVLTVNADFVEALLARGAALRRLGRNRE 128 Query: 115 AVLCYDRILAQSAADAAAIFNRGNVLQKMNCINQALWCYEQALTLQPNFPEA 166 A+ +R A + +A A F RGNVL A YE+A+ L+P+F EA Sbjct: 129 ALADLERATALAPDNADAWFQRGNVLHDSYAYGDARESYERAVALRPDFIEA 180 >gi|300311388|ref|YP_003775480.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 658 Score = 224 bits (571), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 154/413 (37%), Positives = 213/413 (51%), Gaps = 19/413 (4%) Query: 74 RLGRFDEALASLDRALEYAPTHQQALNQRGNVLLHL-NRHEEAVLCYDRILAQSAADAAA 132 +L R DEA L R +E AP A + G+ +R ++A+ +++ L + A Sbjct: 240 KLNRIDEAHEHLLRVIEIAPKDPNAYVKLGSSYFSTSDRFDDAMRMFNKALEVDSKHALT 299 Query: 133 IFNRGNVLQKMNCINQALWCYEQALTLQPNFPEAEMAQSHCLLLQGDFAGGWQHHEARWR 192 N G + + A+ + +AL L+PN+P A + LLLQG GW+ HE+R Sbjct: 300 YNNIGAIQHDHGDLEDAIGNFRKALELRPNYPTARHNIALSLLLQGHLKEGWECHESRLV 359 Query: 193 TTQLRG-----QGLFPHEPAWLGEPPLAGRSILLWAEQGLGDTIQFARYIPLIADMAAQV 247 T + LF P W G+ LAG+ ILL EQG GD+IQF RY+ ++ D A+V Sbjct: 360 TRERSHVYRLIHKLFDLIPKWDGKSSLAGKYILLMHEQGFGDSIQFLRYVRMVLDQGARV 419 Query: 248 TVCVPETLRRLLASLTALPNVTLVSNDKALTPHDFHCPLMSLPLAL-SWTLATIPAGVP- 305 + V L RL S + P VTLV L P D LMSLP A+ + T+ IP+ VP Sbjct: 420 ALHVKNPLYRLFQSYS--PEVTLVRESDPLPPCDCAYVLMSLPYAMGTDTVDDIPS-VPG 476 Query: 306 -YLHADAELKQQWSAV---LGPAP-RLRVGLAWAGR-QHGELNHTRDIPLSHLRPLAEV- 358 YL AD LK W L +P +LRVG+ W G +HG H R I + L ++ Sbjct: 477 GYLSADPILKSSWGEKIRQLSQSPEKLRVGVVWGGNPEHGNDRH-RSIAMDKFATLFQLP 535 Query: 359 EVELVSLQQQIPAGDQAELAQWQRMHRLEAAMTDMAETAALIDNLDLVISADTAVIHLAG 418 +E SLQ+ P L + L D A+TAA I NLDLV+S DT+V+HLAG Sbjct: 536 NIEFYSLQKGKPLDAFKALPPGLPIFNLGDDCQDFADTAAAIANLDLVVSVDTSVVHLAG 595 Query: 419 ALGKPAWLLLRYESEWRWGWQTGSSRWYPTVKVFRQQHRGDWSGVVEEVAECL 471 ALG P W+LL + +WRW S WYP +++FRQ DW V+ +V + L Sbjct: 596 ALGHPTWVLLPHVPDWRWLQDREDSPWYPGMRLFRQPALSDWESVLTKVGQEL 648 >gi|300312352|ref|YP_003776444.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 570 Score = 201 bits (512), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 154/421 (36%), Positives = 212/421 (50%), Gaps = 16/421 (3%) Query: 55 LEERPHEAGLLCEQAALLERLGRFDEALASLDRALEYAPTHQQALNQRGNVLLHLNRHEE 114 L+ P +A +AAL ER ++D A + +AL Q G V + EE Sbjct: 140 LQRDPGQADTWHRKAALHERARQWDAARQCIHQALRLDDQRAQYWLAAGLVEHAQGQFEE 199 Query: 115 AVLCYDRILAQSAADAAAIFNRGNVLQKMNCINQALWCYEQALTLQPNFPEAEMAQSHCL 174 A+ YD+ L + A +RG L ++ +A+ Y +AL + +A + + L Sbjct: 200 ALRYYDQALILAPELVDAHVSRGTTLARLRQHEEAIDSYRRALRIDDKDADAHLNLALSL 259 Query: 175 LLQGDFAGGWQHHEARWRTTQLRGQGLFPHE----PAWLGEPPLAGRSILLWAEQGLGDT 230 L+ G W +E RW G+ P+ PAW G LAG+ ILLWAEQG GDT Sbjct: 260 LVLGRLEQAWPLYEWRWE-----GRSADPYRHATIPAWNGGSSLAGKRILLWAEQGQGDT 314 Query: 231 IQFARYIPLIADMAAQVTVCVPETLRRLLASLTALPNVTLVSNDKALTPHDFHCPLMSLP 290 IQF+RY+ LI AQV + VP +L L+ SL +TLV+ + L DF PLMSLP Sbjct: 315 IQFSRYVALILQAGAQVVLEVPASLLALMHSLAVPTPLTLVAMGEPLPEVDFQLPLMSLP 374 Query: 291 LALSWTLATIPAGVPYLHADAELKQQWS---AVLGP--APRLRVGLAWAGRQHGELNHTR 345 L + IPA VPYL AD + W A L P R+R+GL +G + R Sbjct: 375 LVCNTRADDIPAAVPYLCADPARRILWEERLATLAPRSPARMRIGLVCSGNAGNVNDARR 434 Query: 346 DIPLSHLRP--LAEVEVELVSLQQQIPAGDQAELAQWQRMHRLEAAMTDMAETAALIDNL 403 I LS P LA +++ +Q + D+ Q H + AA+ D A+TAA++ + Sbjct: 435 SIELSRFAPLALARPQLDFFVIQPDLRQADRQWCEQQPGWHWVGAAINDFADTAAVLAGM 494 Query: 404 DLVISADTAVIHLAGALGKPAWLLLRYESEWRWGWQTGSSRWYPTVKVFRQQHRGDWSGV 463 DLVIS DTA HLAGA+ P W+ L Y +WRW S WYPT ++FRQQ G W V Sbjct: 495 DLVISVDTAAAHLAGAMACPVWIALPYAPDWRWLLNAADSPWYPTARLFRQQQPGAWDDV 554 Query: 464 V 464 + Sbjct: 555 I 555 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.136 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,516,515 Number of extensions: 63368 Number of successful extensions: 231 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 213 Number of HSP's successfully gapped: 6 Length of query: 477 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 388 Effective length of database: 1,198,455 Effective search space: 465000540 Effective search space used: 465000540 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 132 (55.5 bits)