BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0117.0026.p (356 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra... 564 e-162 gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H... 365 e-102 gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [H... 358 e-100 gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [H... 336 2e-93 gi|300312694|ref|YP_003776786.1| sugar ABC transporter ATPase [H... 326 2e-90 >gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 364 Score = 564 bits (1454), Expect = e-162, Method: Compositional matrix adjust. Identities = 285/363 (78%), Positives = 308/363 (84%), Gaps = 8/363 (2%) Query: 1 MAKIHLKQVKKTYGKAPKAVDVIHGIDIDIADGEFIVMVGPSGCGKSTLLRMVAGLEEIS 60 MA IHLKQV+KTYG KAVDVIHGID +IADGEFIVMVGPSGCGKSTLLRMVAGLEEIS Sbjct: 1 MAAIHLKQVRKTYGAGTKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEIS 60 Query: 61 SGDIMIGDRVVNNLEPKERDIAMVFQNYALYPHMSVYENMAYGLKIQGLPKAEIDTRVQR 120 SG I+IGDRVVN+LEPKERDIAMVFQNYALYPHM+VY+NMAYGLKIQGL K+EID RVQR Sbjct: 61 SGQIVIGDRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDARVQR 120 Query: 121 AAEILELGALLDRTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 AA ILELGALL+RTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI Sbjct: 121 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 Query: 181 QKLHASLRTTSLYVTHDQVEAMTLGQRMIVMNKGRAEQIGTPAEVYGKPATTFVASFIGS 240 QKLHASLRTTSLYVTHDQVEAMTLGQRMIVMN+G AEQIGTPAEVY +PATTFVASFIGS Sbjct: 181 QKLHASLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGS 240 Query: 241 PPMNLLNGKLSDDGARFTFDDGAVFD-LSTPARVGGGG---RILGIRPEHLQLGRPG--- 293 PPMNLL GKLS DGA F G D L P + G RILG+RPEHL G Sbjct: 241 PPMNLLQGKLSADGASFEVSKGNASDILRLPQPLTGAAGQERILGVRPEHLLPILDGSAA 300 Query: 294 -LNMEVELVEALGAELLVHTRCGGQSMVIRCTAGTDVSMGQQVTAGVDANLLHWFDPQTT 352 L++EVELVEALGAELLVH RCGGQ++V+RC A V GQ++ A A +HWFD ++T Sbjct: 301 QLSLEVELVEALGAELLVHARCGGQALVLRCPANVQVRTGQRIGASFGAGDVHWFDVKST 360 Query: 353 QRI 355 +RI Sbjct: 361 RRI 363 >gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 365 bits (936), Expect = e-102, Method: Compositional matrix adjust. Identities = 195/362 (53%), Positives = 243/362 (67%), Gaps = 19/362 (5%) Query: 1 MAKIHLKQVKKTYGKAPKAVDVIHGIDIDIADGEFIVMVGPSGCGKSTLLRMVAGLEEIS 60 MA + ++ VKK +G + +I G+DIDIADGEF V+VGPSGCGKSTLLRM+AGLEEI+ Sbjct: 1 MASVQIRAVKKQFG----STQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEIT 56 Query: 61 SGDIMIGDRVVNNLEPKERDIAMVFQNYALYPHMSVYENMAYGLKIQGLPKAEIDTRVQR 120 G+I+IG VVNN++PK+RDIAMVFQNYALYPHM+V +NMA+ L + KA +D RV++ Sbjct: 57 GGEILIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKAFVDERVKK 116 Query: 121 AAEILELGALLDRTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 AA+IL L LLDR PRQLSGGQRQRVAMGRAIVR P VFLFDEPLSNLDAKLRVQMR EI Sbjct: 117 AADILGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEI 176 Query: 181 QKLHASLRTTSLYVTHDQVEAMTLGQRMIVMNKGRAEQIGTPAEVYGKPATTFVASFIGS 240 ++LH L+TTS+YVTHDQ+EAMT+ +++VM G EQ G P ++Y PA FVA FIGS Sbjct: 177 KELHQRLKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDYPANLFVAGFIGS 236 Query: 241 PPMNLLNGKLSDD--GARFTFDDGAVFDLSTPARVG-------GGGRILGIRPEHLQLGR 291 P MN + L + GA F DG PA G G G+RPEHL +G Sbjct: 237 PAMNFIPATLRRNATGAEVEFADGT----RVPAPYGAALQGNDGQKVTYGVRPEHLSIGA 292 Query: 292 P--GLNMEVELVEALGAELLVHTRCGGQSMVIRCTAGTDVSMGQQVTAGVDANLLHWFDP 349 G+ +V +VE GA+ V +R G S+ D G + D + H FD Sbjct: 293 AGQGIATKVIVVEPTGADTEVFSRFGDTSLTSIFRERHDFGAGDVIHLVPDHSRTHLFDA 352 Query: 350 QT 351 ++ Sbjct: 353 ES 354 >gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 358 bits (919), Expect = e-100, Method: Compositional matrix adjust. Identities = 194/361 (53%), Positives = 250/361 (69%), Gaps = 16/361 (4%) Query: 1 MAKIHLKQVKKTY-GKAPKAVDVIHGIDIDIADGEFIVMVGPSGCGKSTLLRMVAGLEEI 59 MA +++KQ++KTY G+A DV+ G+++DI DGEF V+VGPSGCGKSTLLRM+ GLEEI Sbjct: 1 MAHVNIKQLRKTYDGRA----DVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLEEI 56 Query: 60 SSGDIMIGDRVVNNLEPKERDIAMVFQNYALYPHMSVYENMAYGLKIQGLPKAEIDTRVQ 119 S G++ IG +VVN+L P ER IAMVFQ+YALYPHM+VY+NMA+GLK+ G K++ID R++ Sbjct: 57 SGGELAIGGQVVNHLPPAERGIAMVFQSYALYPHMNVYKNMAFGLKVAGNSKSDIDARIR 116 Query: 120 RAAEILELGALLDRTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLE 179 AA IL++ LL R PR+LSGGQRQRVA+GRAIVR+P +FLFDEPLSNLDA LRVQ RLE Sbjct: 117 HAAAILKIDHLLQRLPRELSGGQRQRVAIGRAIVRQPRLFLFDEPLSNLDAALRVQTRLE 176 Query: 180 IQKLHASLRTTSLYVTHDQVEAMTLGQRMIVMNKGRAEQIGTPAEVYGKPATTFVASFIG 239 I KLH L T +YVTHDQVEAMTLG +++VM++GR +Q GTP E+Y +P FVA FIG Sbjct: 177 IAKLHRQLAATIVYVTHDQVEAMTLGDKIVVMHEGRIQQAGTPLELYQQPQNLFVAGFIG 236 Query: 240 SPPMNLLNG---KLSDDGARFTFDDG--AVFDLSTPARVGGGGRILGIRPEHLQL----G 290 SP MN G + D G + G + D+ G LG+R E ++ G Sbjct: 237 SPKMNFFQGVVTRCDDSGVQVEIAGGLRLLADVDPLGVTPGAAVTLGLRAEQIREGLGDG 296 Query: 291 RPGLNMEVELVEALG-AELLVHTRCGGQSMVIRCTAGTDVSMGQQVTAGVDANLLHWFDP 349 +P L+ V LVE LG A L T GG +V+R +V +GQ + V ++ H FD Sbjct: 297 QP-LHGVVNLVEHLGEANFLYVTLDGGHDIVVRGDGNRNVDIGQPIALSVHSHAFHLFDA 355 Query: 350 Q 350 Q Sbjct: 356 Q 356 >gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 336 bits (861), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 183/369 (49%), Positives = 242/369 (65%), Gaps = 21/369 (5%) Query: 1 MAKIHLKQVKKTYGKAPKAVDVIHGIDIDIADGEFIVMVGPSGCGKSTLLRMVAGLEEIS 60 MA + ++ + K Y +V+ I+++I DGEF+V VGPSGCGKSTLLRM+AGLEEIS Sbjct: 1 MAAVSIRNLAKRYDDN----EVMRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEEIS 56 Query: 61 SGDIMIGDRVVNNLEPKERDIAMVFQNYALYPHMSVYENMAYGLKIQGLPKAEIDTRVQR 120 GD+ IG R +N + +R +AMVFQ+YALYPHMS+Y+NMA+GLKI G KAEID VQ Sbjct: 57 DGDLDIGARRMNEVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQH 116 Query: 121 AAEILELGALLDRTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 AA+IL + LLDR PR LSGGQRQRVA+GRAI R+P+VFLFDEPLSNLDA LRV+MRLE Sbjct: 117 AAKILHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEF 176 Query: 181 QKLHASLRTTSLYVTHDQVEAMTLGQRMIVMNKGRAEQIGTPAEVYGKPATTFVASFIGS 240 KLH L+TT +YVTHDQ+EAMTL +++V+++GR EQ+G+P ++Y PA FVA FIGS Sbjct: 177 AKLHDDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRFVAGFIGS 236 Query: 241 PPMNLLNGKLS---DDGARFTFDDG----AVFDLSTPARVGGGGRI-LGIRPEHLQL--G 290 P MN ++G ++ DG + G A D ST + G ++ LG+RPEHL + G Sbjct: 237 PKMNFIDGTVAAIQADGVQVQLPGGGLQWAAVDGST---LQVGQKVTLGVRPEHLNIAQG 293 Query: 291 RPGLNMEVELVEALGAELLVHTRCGGQ--SMVIRCTAGTDVSMGQQVTAGVDANLLHWF- 347 + L +E LG ++ G ++++R D G + D H F Sbjct: 294 QAALQARCTALELLGDFSYLYAAYEGSEDALILRVPDSLDAPHGSVLPLAADPARCHLFG 353 Query: 348 -DPQTTQRI 355 D Q R+ Sbjct: 354 ADGQALPRL 362 >gi|300312694|ref|YP_003776786.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 406 Score = 326 bits (835), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 180/373 (48%), Positives = 243/373 (65%), Gaps = 28/373 (7%) Query: 1 MAKIHLKQVKKTYGKAPKAVDVIHGIDIDIADGEFIVMVGPSGCGKSTLLRMVAGLEEIS 60 MA IH + + K Y P V+H +D+ I DGEF+V++GPSGCGKST+LRM+AGLE+IS Sbjct: 1 MADIHCQALAKHYAGGPP---VLHPLDLHIGDGEFVVLLGPSGCGKSTMLRMIAGLEDIS 57 Query: 61 SGDIMIGDRVVNNLEPKERDIAMVFQNYALYPHMSVYENMAYGLKIQGLPKAEIDTRVQR 120 G + IG VVN+L +ER++AMVFQNYALYPHMSVY+N+A+GL+ P AEID RV+ Sbjct: 58 GGTLRIGGTVVNDLPARERNVAMVFQNYALYPHMSVYDNIAFGLRRLKRPAAEIDRRVRE 117 Query: 121 AAEILELGALLDRTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 A +L L ALL+R PR +SGGQ+QR A+ RAI++ P+VFLFDEPLSNLDAKLR Q+R +I Sbjct: 118 VAALLNLEALLERKPRAMSGGQQQRAAIARAIIKTPSVFLFDEPLSNLDAKLRAQLRGDI 177 Query: 181 QKLHASLRTTSLYVTHDQVEAMTLGQRMIVMNKGRAEQIGTPAEVYGKPATTFVASFIGS 240 ++LH LRTT++YVTHDQ+EAMTL R+I+M GR Q G+PAE+Y P F A FIG+ Sbjct: 178 KRLHQRLRTTTVYVTHDQLEAMTLADRVILMQDGRIVQAGSPAELYRYPRNLFAAGFIGT 237 Query: 241 PPMNLLNGKLSDDGARFTFDDGAVFDLSTPARVGGGGR-----------ILGIRPEHLQL 289 P MN L+G + DG +F + R G L +RP+H+++ Sbjct: 238 PAMNFLSGTVQR-------QDGQLFIETAHQRWALTGERFSRLRHAMAVKLAVRPDHVRI 290 Query: 290 G---RPGLNM----EVELVEALGAELLVHTRCGGQSMVIRCTAGTDVSMGQQVTAGVDAN 342 P ++ VELVE LGA+ L+ TRCG Q++ A G +T +D + Sbjct: 291 AGEREPAASLTCPVSVELVEILGADALLTTRCGDQTLTALVPADRLPQPGATLTLALDQH 350 Query: 343 LLHWFDPQTTQRI 355 LH FD ++ + + Sbjct: 351 ELHVFDVESGENL 363 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.138 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,027,282 Number of extensions: 40488 Number of successful extensions: 525 Number of sequences better than 1.0e-08: 130 Number of HSP's gapped: 335 Number of HSP's successfully gapped: 141 Length of query: 356 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 270 Effective length of database: 1,212,660 Effective search space: 327418200 Effective search space used: 327418200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)