BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0117.0021.p
         (302 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313090|ref|YP_003777182.1| 4-hydroxybenzoate octaprenyltra...   438   e-124
gi|300313438|ref|YP_003777530.1| protoheme IX farnesyltransferas...    75   5e-15

>gi|300313090|ref|YP_003777182.1| 4-hydroxybenzoate
           octaprenyltransferase transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 284

 Score =  438 bits (1127), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 211/284 (74%), Positives = 243/284 (85%)

Query: 19  MNRLNLYFRLVRLHKPIGILLLLWPTLMALWFAAGGRPDWHIVLIFTLGTVLMRSAGCAI 78
           M+RL LY  LVR HKPIGILLLLWPTL+ALW AAGG PDW I++I+ +GTVLMRSAGCAI
Sbjct: 1   MDRLRLYALLVRAHKPIGILLLLWPTLIALWLAAGGVPDWRILVIYIVGTVLMRSAGCAI 60

Query: 79  NDYADRDFDKHVKRTVDRPLTAGKIHGWEALMVAGVLALASFLLILPLNTLTKQMSVPAL 138
           NDYADR+FD+HVKRT  RPLT+GKI  WEALMVAGVLAL SFLLILPLN LT Q+SV A+
Sbjct: 61  NDYADRNFDRHVKRTEQRPLTSGKIKSWEALMVAGVLALVSFLLILPLNALTLQLSVAAV 120

Query: 139 IVAASYPYFKRFFAIPQAYLGIAFGFGIPMGFAAVQGQVPAAAWLMLLGNVFWSVAYDTA 198
           I+A +YPYFKRFFAIPQAYLGIAFGFGIPMGFA+V G VP AAW++L+ N+FW+VAYDT 
Sbjct: 121 IIAGTYPYFKRFFAIPQAYLGIAFGFGIPMGFASVTGTVPLAAWVLLVANIFWAVAYDTE 180

Query: 199 YAMVDRDDDIKLGMKTSAITFGRFDVLAIMLCYVAALGIFWAVGWHFGLRIWFTLGMLAA 258
           YAMVDRDDD+K+G+KTSAITFGR+DV A+MLCY  AL + W VG  +GL +WF+ GML A
Sbjct: 181 YAMVDRDDDLKIGIKTSAITFGRYDVAAVMLCYAVALALIWMVGLQYGLGLWFSAGMLVA 240

Query: 259 AGCAVYHYTLIRTRDRTGCFAAFVHNNWLGAMMFAGVAVDYALR 302
            G AVYHYTLIR RDR  CFAAF +NNWLGA +FAGVA+DY +R
Sbjct: 241 CGFAVYHYTLIRERDRMRCFAAFNNNNWLGAAIFAGVALDYLMR 284


>gi|300313438|ref|YP_003777530.1| protoheme IX farnesyltransferase
           (heme O synthase) transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 297

 Score = 75.5 bits (184), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 132/286 (46%), Gaps = 10/286 (3%)

Query: 20  NRLNLYFRLVRLHKPIGILLLLWPTLMALWFAAGGRPDWHIVLIFTLGTVLMRSAGCAIN 79
           NR+  Y+ L    KP    L ++  ++ ++ +    PDWH V+  TLG  L+  A  AIN
Sbjct: 9   NRIAQYWALT---KPRVTQLAVFCAVIGMFLSTPDLPDWHKVIFGTLGIWLLAGAAFAIN 65

Query: 80  DYADRDFDKHVKRTVDRPLTAGKIHGWEALMVAGVL-ALASFLLILPLNTLTKQMSVPAL 138
              +R+ D  + RT  RP+  G+I   + L+ +GVL  L  ++L   +N LT  ++    
Sbjct: 66  CLVEREIDSRMARTARRPMARGEITVGQTLVFSGVLGGLGMWVLYNLVNPLTMWLTFATF 125

Query: 139 IVAASYPYFKRFFAIPQAYL--GIAFGFGIPMGFAAVQGQVPAAAWLMLLGNVFWSVAYD 196
           +  A         A  Q  +  G+A      +G+AA+   VP  AW++++    W+  + 
Sbjct: 126 VGYAIIYTIVLKPATSQNIVIGGLAGAMPPALGWAAMANDVPMQAWVLVMIIFIWTPPHF 185

Query: 197 TAYAMVDRDDDIKLGMKTSAITFGRFDVLAI-MLCYVAALGIFWAVGWHFGLRIWFTLGM 255
            A AM  RDD  K G+    IT G  DV  + +L Y  AL     + +  G+     LG 
Sbjct: 186 WALAMYRRDDYAKSGLPMLPITHG-MDVTKLHVLMYTIALFAVSLLPFAIGMSGLIYLGT 244

Query: 256 LAAAGCAVYHYTLIRTRDRTGCFA--AFVHNNWLGAMMFAGVAVDY 299
               G   + Y+    R  T   A  AF ++    +++FA + VD+
Sbjct: 245 AVVLGAIFFWYSWQMYRRYTDLIARKAFAYSIVYLSILFAVLLVDH 290


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.332    0.144    0.483 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 878,117
Number of extensions: 35860
Number of successful extensions: 155
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 2
Length of query: 302
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 217
Effective length of database: 1,217,395
Effective search space: 264174715
Effective search space used: 264174715
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 130 (54.7 bits)