BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0117.0019.p
         (170 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313096|ref|YP_003777188.1| pyrroline-5-carboxylate reducta...   170   5e-44

>gi|300313096|ref|YP_003777188.1| pyrroline-5-carboxylate reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 270

 Score =  170 bits (431), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 87/124 (70%), Positives = 102/124 (82%)

Query: 46  ILRAVGTTVWLDSEDLIDPVTAVSGSGPAYVFYFMEAMQKAAVELGLSAEQGVELAKATF 105
           IL+AVG T+WL  E  ID VTAVSGSGPAYVFYF+EAM++AA +LGLS  +G+ELAKATF
Sbjct: 146 ILKAVGQTLWLSDEAQIDAVTAVSGSGPAYVFYFLEAMEQAAAQLGLSPAEGLELAKATF 205

Query: 106 AGAVELAIRSPEPLSLLRERVTSKGGTTYAALTSMEGDGVAERIVTAVKAAAARGKELGE 165
            GA ELA RS E ++ LRERVTSKGGTTYAALTS+E  GV + IV A++AAA R KELG+
Sbjct: 206 EGATELARRSEESVATLRERVTSKGGTTYAALTSLEQSGVKDAIVKALQAAAVRSKELGD 265

Query: 166 EFGK 169
           EFGK
Sbjct: 266 EFGK 269



 Score = 61.2 bits (147), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 33/42 (78%)

Query: 2  LKIGFIGGGNMAAALIGGLAGKLTDGNNIHVVDLNPESLEKL 43
          +KI FIGGGNMAAALIGGL GK+    +IHVVDLN ++L  L
Sbjct: 1  MKIAFIGGGNMAAALIGGLVGKVAAAQDIHVVDLNAQALASL 42


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.133    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 475,185
Number of extensions: 18442
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 2
Length of query: 170
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 91
Effective length of database: 1,245,805
Effective search space: 113368255
Effective search space used: 113368255
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 127 (53.5 bits)