BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0117.0014.p
         (175 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311069|ref|YP_003775161.1| phosphatidylserine decarboxylas...   315   2e-87

>gi|300311069|ref|YP_003775161.1| phosphatidylserine decarboxylase
           proenzyme protein [Herbaspirillum seropedicae SmR1]
          Length = 214

 Score =  315 bits (806), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 152/173 (87%), Positives = 156/173 (90%)

Query: 2   NNHYPHPIIAREGWPFLGIAVVVAVVVTLIGGAWSIPFWIIALFVLQFFRDPPRTIPQNP 61
           NNHYPHPIIAREGWPFL IAVVVA + T   GAWS P WIIALFVLQFFRDPPR IPQ  
Sbjct: 3   NNHYPHPIIAREGWPFLTIAVVVAALATYFCGAWSFPLWIIALFVLQFFRDPPRVIPQAA 62

Query: 62  NAVLSPADGRIVVVAKAHDPYTNREALKISVFMNVFNVHSNRAPVDGKIETVQYFPGKFV 121
           NAVLSPADGRIVVVA+AHDPYT+REALKISVFMNVFNVHSNRAPVDGKIE VQYFPGKFV
Sbjct: 63  NAVLSPADGRIVVVARAHDPYTDREALKISVFMNVFNVHSNRAPVDGKIEKVQYFPGKFV 122

Query: 122 NADLDKASLENERNALAITAANGQSVTCVQVAGLIARRILCYVKAGDVLARGH 174
           NADLDKASLENERNALAIT  +G SVTCVQVAGLIARRILCYVKAGD LARG 
Sbjct: 123 NADLDKASLENERNALAITTTSGHSVTCVQVAGLIARRILCYVKAGDTLARGQ 175


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.139    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 562,804
Number of extensions: 20960
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 1
Length of query: 175
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 96
Effective length of database: 1,245,805
Effective search space: 119597280
Effective search space used: 119597280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 127 (53.5 bits)