BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0117.0013.p
         (248 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311067|ref|YP_003775159.1| hypothetical protein Hsero_1738...   299   2e-82

>gi|300311067|ref|YP_003775159.1| hypothetical protein Hsero_1738
           [Herbaspirillum seropedicae SmR1]
          Length = 262

 Score =  299 bits (765), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 163/262 (62%), Positives = 195/262 (74%), Gaps = 14/262 (5%)

Query: 1   MSRSSQLLFAAVLATATMAAHAQS-------VQTTGTMVVIPASGELVVPNDEARATLNV 53
           M+ S +L+  AVLATA +AA AQ+       V T+GTMVV+PA+GE+ VPND+AR TL V
Sbjct: 1   MTPSRKLMLGAVLATACIAAQAQTAMTAPAPVPTSGTMVVVPANGEISVPNDQARVTLQV 60

Query: 54  EEQDKDKAAAASRVNKKMKQGIDIVKRQDPQAQLKTRGYYTYAVYAE-------DPRPTN 106
           EEQDKDKAAAASRVN+KMKQGI+++KRQDPQA LK+ GYYTYAVYAE        PR   
Sbjct: 61  EEQDKDKAAAASRVNQKMKQGIELLKRQDPQAALKSYGYYTYAVYAEPPQVTPQQPRQPA 120

Query: 107 KPRPIVGWRVGQYLDVTTTNLEGLPRTVAAAQGVLGLNNLQFGLSPAATRKLDADLINAT 166
           K R +VGWRVGQYL++TT NL  LP+TV++AQ ++ LN LQFGLSPAA +KLDA L+NAT
Sbjct: 121 KARQVVGWRVGQYLEMTTENLAALPKTVSSAQALMSLNGLQFGLSPAAAKKLDATLVNAT 180

Query: 167 FKNLNERIASIAGAMGRRGNDAVLETVDFEGSGNYAQNAPAPKAMMMRAMADAPAQEAVA 226
           ++NL ERI  IA AM R  +DAV+ETVDFEGSGNYA  APAP                VA
Sbjct: 181 YRNLEERIGFIANAMHRAPSDAVIETVDFEGSGNYAAPAPAPMMAKAMRADMVQESTTVA 240

Query: 227 EPSFEPGDTTIGMHLVGKVRFK 248
           EPSFEPG++T+ M LVGKVRFK
Sbjct: 241 EPSFEPGESTVNMRLVGKVRFK 262


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.128    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 670,245
Number of extensions: 26555
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 165
Effective length of database: 1,226,865
Effective search space: 202432725
Effective search space used: 202432725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)