BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0117.0010.p
         (179 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313100|ref|YP_003777192.1| ketol-acid reductoisomerase oxi...   294   3e-81
gi|300311066|ref|YP_003775158.1| ketol-acid reductoisomerase oxi...   293   4e-81

>gi|300313100|ref|YP_003777192.1| ketol-acid reductoisomerase
           oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 338

 Score =  294 bits (752), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 141/151 (93%), Positives = 144/151 (95%)

Query: 21  FFXETETDLFGEQAVLCGGAVELIKAGFETLVEAGYAPEMAYFECLHELKLIVDLIYEGG 80
           F  ETETDLFGEQAVLCGG VELIKAGFETLVEAGYAPEMAYFECLHELKLIVDLIYEGG
Sbjct: 183 FREETETDLFGEQAVLCGGTVELIKAGFETLVEAGYAPEMAYFECLHELKLIVDLIYEGG 242

Query: 81  IANMNYSISNNAEYGEYVTGPRIINEESKKVMKQVLNDIQTGEYAKSFILENKAGAPTLL 140
           IANMNYSISNNAEYGEYVTGPR+IN ESK  MK+VL DIQTGEYAKSFILENKAGAPTL+
Sbjct: 243 IANMNYSISNNAEYGEYVTGPRVINAESKAAMKKVLEDIQTGEYAKSFILENKAGAPTLM 302

Query: 141 SRRRINAEHQIEIVGEKLRAMMPWIKANKLV 171
           SRRRINAEHQIEIVGEKLRAMMPWIKANKLV
Sbjct: 303 SRRRINAEHQIEIVGEKLRAMMPWIKANKLV 333


>gi|300311066|ref|YP_003775158.1| ketol-acid reductoisomerase
           oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 338

 Score =  293 bits (751), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 141/151 (93%), Positives = 144/151 (95%)

Query: 21  FFXETETDLFGEQAVLCGGAVELIKAGFETLVEAGYAPEMAYFECLHELKLIVDLIYEGG 80
           F  ETETDLFGEQAVLCGG VELIKAGFETLVEAGYAPEMAYFECLHELKLIVDLIYEGG
Sbjct: 183 FREETETDLFGEQAVLCGGTVELIKAGFETLVEAGYAPEMAYFECLHELKLIVDLIYEGG 242

Query: 81  IANMNYSISNNAEYGEYVTGPRIINEESKKVMKQVLNDIQTGEYAKSFILENKAGAPTLL 140
           IANMNYSISNNAEYGEYVTGPR+IN ESK  MK+VL DIQTGEYAKSFILENKAGAPTL+
Sbjct: 243 IANMNYSISNNAEYGEYVTGPRVINAESKAAMKKVLEDIQTGEYAKSFILENKAGAPTLM 302

Query: 141 SRRRINAEHQIEIVGEKLRAMMPWIKANKLV 171
           SRRRINAEHQIEIVGEKLRAMMPWIKANKLV
Sbjct: 303 SRRRINAEHQIEIVGEKLRAMMPWIKANKLV 333


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.140    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 455,408
Number of extensions: 15690
Number of successful extensions: 52
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 2
Length of query: 179
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 100
Effective length of database: 1,245,805
Effective search space: 124580500
Effective search space used: 124580500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)