BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0117.0007.p
         (202 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311064|ref|YP_003775156.1| acetolactate synthase isozyme I...   312   1e-86
gi|300311743|ref|YP_003775835.1| acetolactate synthase [Herbaspi...    55   4e-09

>gi|300311064|ref|YP_003775156.1| acetolactate synthase isozyme III
           large subunit [Herbaspirillum seropedicae SmR1]
          Length = 572

 Score =  312 bits (799), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 145/161 (90%), Positives = 155/161 (96%)

Query: 1   LLTAERPMIYTGGGVILANAAPELNKLVDRLGFPCTNTLMGLGAYRSTSDKFVGMPGMHG 60
           LL+AERPMIYTGGG+ILANAAPELNKLVDRLG+PCTNTLMGLGAYRS+SDKFVGMPGMHG
Sbjct: 203 LLSAERPMIYTGGGIILANAAPELNKLVDRLGYPCTNTLMGLGAYRSSSDKFVGMPGMHG 262

Query: 61  TYEANMAMQHSDVMIAIGARFDDRVIGNPKHFASNARKIIHIDIDPSSISKRVKVDIPIV 120
           TYEANMAMQH DV+IAIGARFDDRVIGNPKHFAS+ARKIIHIDIDPSSISKRVKVDIPIV
Sbjct: 263 TYEANMAMQHCDVLIAIGARFDDRVIGNPKHFASHARKIIHIDIDPSSISKRVKVDIPIV 322

Query: 121 GNVKDVLQELLTQLDAAETKPNAPALANWWKQINKWRERDC 161
           GNVKDVLQELL+QLDAAET+ N  AL  WWKQIN+WR+RDC
Sbjct: 323 GNVKDVLQELLSQLDAAETRQNGAALDAWWKQINEWRKRDC 363


>gi|300311743|ref|YP_003775835.1| acetolactate synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 625

 Score = 55.1 bits (131), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 6/159 (3%)

Query: 1   LLTAERPMIYTGGGVILANAAPELNKLVDRLGFPCTNTLMGLGAYRSTSDKFVGMPGMHG 60
           L  A +P++  GGGV+  NA   L +  ++ G P   T  G  A   +    +G  G+ G
Sbjct: 233 LRQARQPLLIAGGGVLYGNACEHLRRFAEQHGVPVAETQAGKSALPWSHALQMGAIGVTG 292

Query: 61  TYEANMAMQHSDVMIAIGARFDDRVIGNPKHFASNARKIIHIDIDPSSISKRVKVDIPIV 120
           +  AN   Q +DV+IA+G R  D   G+   FA    ++++++++     K   + +   
Sbjct: 293 SPAANALAQEADVVIAVGTRLQDFTTGSHTLFAQ--ARLLNLNVNAMDAHKWRGLALQAD 350

Query: 121 GNVKDVLQELLTQLDAAETKPNAPALANWWKQINKWRER 159
             +   L+ L   L+   + P   A A+   Q   WRER
Sbjct: 351 AGLG--LEALSHALEGWRSAPEWHARAHTLAQ--DWRER 385


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 662,142
Number of extensions: 27098
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 2
Length of query: 202
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 121
Effective length of database: 1,236,335
Effective search space: 149596535
Effective search space used: 149596535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)