BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0117.0006.p
         (153 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311064|ref|YP_003775156.1| acetolactate synthase isozyme I...   252   8e-69
gi|300311584|ref|YP_003775676.1| pyruvate dehydrogenase [Herbasp...    72   2e-14

>gi|300311064|ref|YP_003775156.1| acetolactate synthase isozyme III
           large subunit [Herbaspirillum seropedicae SmR1]
          Length = 572

 Score =  252 bits (644), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 121/126 (96%), Positives = 124/126 (98%)

Query: 1   MSAENLTGAEILVRCLAEEGVEHVFGYPGGAVLYIYDAIFKQDKFQHILVRHEQAAVHAA 60
           MSAE LTGA+ILVRCLAEEGVEHVFGYPGGAVLYIYDAIFKQDKFQHILVRHEQAAVHAA
Sbjct: 1   MSAEQLTGADILVRCLAEEGVEHVFGYPGGAVLYIYDAIFKQDKFQHILVRHEQAAVHAA 60

Query: 61  DAYSRSSEKVGVCIVTSGPGVTNAVTGLATAYMDSIPMIVISGQVPSTAIGQDAFQECDT 120
           DAYSRSS+KVGV IVTSGPGVTNAVTGLATAYMDSIPM+VISGQVPSTAIGQDAFQECDT
Sbjct: 61  DAYSRSSQKVGVAIVTSGPGVTNAVTGLATAYMDSIPMVVISGQVPSTAIGQDAFQECDT 120

Query: 121 VGITRP 126
           VGITRP
Sbjct: 121 VGITRP 126


>gi|300311584|ref|YP_003775676.1| pyruvate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 564

 Score = 72.4 bits (176), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 63/111 (56%)

Query: 7   TGAEILVRCLAEEGVEHVFGYPGGAVLYIYDAIFKQDKFQHILVRHEQAAVHAADAYSRS 66
           T A+IL+  L E GV  +FG  G A+  + DAI +  + + I VRHE+ A  AA   ++ 
Sbjct: 4   TVADILIDTLYEIGVRQIFGVVGDALNPLTDAIRRDKRIEWIGVRHEEGAALAAAGQAKL 63

Query: 67  SEKVGVCIVTSGPGVTNAVTGLATAYMDSIPMIVISGQVPSTAIGQDAFQE 117
           + ++ VC  T+GPG  + V GL  A  D  P++ ISG VP+   G D  QE
Sbjct: 64  TGRLAVCCGTTGPGANHLVAGLYEARKDHAPVLAISGGVPAAHRGTDYLQE 114


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.133    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 446,397
Number of extensions: 16551
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 2
Length of query: 153
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 76
Effective length of database: 1,255,275
Effective search space: 95400900
Effective search space used: 95400900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)