BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0117.0005.p
         (92 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311062|ref|YP_003775154.1| hypothetical protein Hsero_1733...    79   5e-17

>gi|300311062|ref|YP_003775154.1| hypothetical protein Hsero_1733
          [Herbaspirillum seropedicae SmR1]
          Length = 136

 Score = 79.3 bits (194), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 57/93 (61%), Positives = 68/93 (73%), Gaps = 6/93 (6%)

Query: 1  MNNKELQFAYRVKRALDANLEHLPESTTQSLAEARRVALARKKKTAPVRAVAPQFVLAGA 60
          MNNKE+QFAY+VK ALDANL++L + T QSLA ARRVALARKK+T P+     Q VLAGA
Sbjct: 1  MNNKEMQFAYKVKLALDANLDNLSDDTLQSLAAARRVALARKKQT-PMTVRVEQPVLAGA 59

Query: 61 ---SGGSFTPSSSFSWLGRLGVAIPLLEXWLLI 90
             +GG  +P +  SWLGRLGVA PLL   +L 
Sbjct: 60 FGSAGGMLSPKA--SWLGRLGVAAPLLAGIILF 90


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.131    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 217,286
Number of extensions: 5886
Number of successful extensions: 32
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 1
Length of query: 92
Length of database: 1,619,870
Length adjustment: 62
Effective length of query: 30
Effective length of database: 1,326,300
Effective search space: 39789000
Effective search space used: 39789000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)