BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0116.0030.p (139 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313421|ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase [Herba... 240 2e-65 gi|300313287|ref|YP_003777379.1| beta-ketoadipyl-CoA thiolase [H... 230 3e-62 gi|300309598|ref|YP_003773690.1| acetyl-CoA acyltransferase [Her... 122 8e-30 gi|300309581|ref|YP_003773673.1| acetyl-CoA acetyltransferase [H... 118 2e-28 gi|300313295|ref|YP_003777387.1| acetyl-CoA acetyltransferase [H... 100 3e-23 >gi|300313421|ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase [Herbaspirillum seropedicae SmR1] Length = 401 Score = 240 bits (613), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 118/139 (84%), Positives = 128/139 (92%) Query: 1 VLLASAAAVDRYQLKPRAKVLGMATAGLAPRIMGFGPSPASRKVLAQTGLKLEQMDVIEL 60 +LLAS A D Y+LKPRA+VLGMATAG+APRIMGFGP+PA RKVLAQ GL L QMDVIEL Sbjct: 262 LLLASPKAADLYRLKPRARVLGMATAGVAPRIMGFGPAPAVRKVLAQVGLTLAQMDVIEL 321 Query: 61 NEAFAAQGLAVTRDLGLADDAVHVNPNGGAIAIGHPLGASGARLITTALNQLERTGGRYA 120 NEAFAAQGLAV RDLGL DDA HVNPNGGAIAIGHPLGASGARL+TTA+NQLER+GGRYA Sbjct: 322 NEAFAAQGLAVMRDLGLPDDAAHVNPNGGAIAIGHPLGASGARLVTTAINQLERSGGRYA 381 Query: 121 LCTMCIGVGQGIAVIIERV 139 LCTMCIGVGQGIA++IERV Sbjct: 382 LCTMCIGVGQGIALVIERV 400 >gi|300313287|ref|YP_003777379.1| beta-ketoadipyl-CoA thiolase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 230 bits (587), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 110/139 (79%), Positives = 128/139 (92%) Query: 1 VLLASAAAVDRYQLKPRAKVLGMATAGLAPRIMGFGPSPASRKVLAQTGLKLEQMDVIEL 60 +LLASA AV++YQLKPRA++LGMATAG+APRIMG GP+PAS+KVLAQ G+ ++QMDVIEL Sbjct: 262 LLLASAEAVEKYQLKPRARILGMATAGVAPRIMGMGPAPASKKVLAQLGMTIDQMDVIEL 321 Query: 61 NEAFAAQGLAVTRDLGLADDAVHVNPNGGAIAIGHPLGASGARLITTALNQLERTGGRYA 120 NEAFA+QGLAV R+LG+ADD VNPNGGAIA+GHPLG SGARL+TTA QLERTGGRYA Sbjct: 322 NEAFASQGLAVLRELGVADDDARVNPNGGAIALGHPLGMSGARLVTTATYQLERTGGRYA 381 Query: 121 LCTMCIGVGQGIAVIIERV 139 LCTMCIGVGQGIA++IERV Sbjct: 382 LCTMCIGVGQGIAMVIERV 400 >gi|300309598|ref|YP_003773690.1| acetyl-CoA acyltransferase [Herbaspirillum seropedicae SmR1] Length = 398 Score = 122 bits (307), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 67/139 (48%), Positives = 85/139 (61%), Gaps = 2/139 (1%) Query: 1 VLLASAAAVDRYQLKPRAKVLGMATAGLAPRIMGFGPSPASRKVLAQTGLKLEQMDVIEL 60 +++ S + ++ L P A+ + A G+ P IMG GP A L GL +Q+D IEL Sbjct: 262 LIIVSEKILKQFNLTPLARFVSFAVRGVPPEIMGIGPKEAIPAALKAGGLTQDQIDWIEL 321 Query: 61 NEAFAAQGLAVTRDLGLADDAVHVNPNGGAIAIGHPLGASGARLITTALNQLERTGGRYA 120 NEAFAAQ LAV DLGL D VNP GGAIA+GHPLGA+GA T ++ L R +Y Sbjct: 322 NEAFAAQALAVIGDLGL--DPSKVNPMGGAIALGHPLGATGAIRAATTIHALRRKNLKYG 379 Query: 121 LCTMCIGVGQGIAVIIERV 139 + TMC+G G G A I ERV Sbjct: 380 MVTMCVGTGMGAAGIFERV 398 >gi|300309581|ref|YP_003773673.1| acetyl-CoA acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 391 Score = 118 bits (295), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 60/138 (43%), Positives = 89/138 (64%), Gaps = 2/138 (1%) Query: 1 VLLASAAAVDRYQLKPRAKVLGMATAGLAPRIMGFGPSPASRKVLAQTGLKLEQMDVIEL 60 V++ SA L AK+ ++AGL P IMG GP PAS+ L + G + +D++E+ Sbjct: 256 VVVTSAKLAAELGLPVLAKIKAYSSAGLDPSIMGMGPVPASQLTLKKAGWTPQDLDLMEI 315 Query: 61 NEAFAAQGLAVTRDLGLADDAVHVNPNGGAIAIGHPLGASGARLITTALNQLERTGGRYA 120 NEAFAAQ +AV + +G D +N NGGAIA+GHP+GASG R++ T L+++ R + Sbjct: 316 NEAFAAQAIAVNKQMGW--DTSKINVNGGAIALGHPIGASGCRVLVTLLHEMVRRDAKKG 373 Query: 121 LCTMCIGVGQGIAVIIER 138 L ++CIG G G+A+ +ER Sbjct: 374 LASLCIGGGMGVALAVER 391 >gi|300313295|ref|YP_003777387.1| acetyl-CoA acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 417 Score = 100 bits (250), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 53/107 (49%), Positives = 71/107 (66%), Gaps = 2/107 (1%) Query: 31 RIMGFGPSPASRKVLAQTGLKLEQMDVIELNEAFAAQGLAVTRDLGLADDAVHVNPNGGA 90 IMG GP PA R +L + GL + + E+NEA AQ +AV R+LG+ D +N NGGA Sbjct: 307 EIMGIGPVPAIRTLLERNGLTVADIGCFEINEAQGAQIVAVERELGI--DRERLNVNGGA 364 Query: 91 IAIGHPLGASGARLITTALNQLERTGGRYALCTMCIGVGQGIAVIIE 137 IA+GHPL A+G RL TA ++ R G RY + + CIG GQGIA+++E Sbjct: 365 IALGHPLAATGVRLSITAAREMNRRGARYCVASACIGGGQGIALLLE 411 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 475,314 Number of extensions: 20656 Number of successful extensions: 90 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 87 Number of HSP's successfully gapped: 6 Length of query: 139 Length of database: 1,619,870 Length adjustment: 76 Effective length of query: 63 Effective length of database: 1,260,010 Effective search space: 79380630 Effective search space used: 79380630 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)