BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0116.0028.p
         (824 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311890|ref|YP_003775982.1| P pilus assembly protein, porin...    60   9e-10

>gi|300311890|ref|YP_003775982.1| P pilus assembly protein, porin
           PapC protein [Herbaspirillum seropedicae SmR1]
          Length = 764

 Score = 59.7 bits (143), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 90/202 (44%), Gaps = 10/202 (4%)

Query: 214 TKQSGG-KIRFQNTATYLQRELVDLKSQLTLGDTYTTGQFFD-SFSFRGVRLASDDRMLP 271
           T  SGG   R ++T TY Q   +   ++  LGD   +   +  S    G + ASD  + P
Sbjct: 166 TGNSGGVSARLESTLTYSQPASL---TRYRLGDVINSSLAWSRSVRLGGFQYASDFNLRP 222

Query: 272 DSLTGYAPVVRGVAKTNAKVTVSQGGNILYETTVAPGQFEINDLYSTGYGGDLSVVITEA 331
           D +    P + G     + V +   G       V PG FEI         G ++V +T+ 
Sbjct: 223 DLVRFPTPSLGGETVVPSTVDLFVNGVRQLSQPVPPGPFEIRQPPIASGAGQIAVAVTDE 282

Query: 332 DGSRTSFTVPYASVAQLLRPGVGRYSVTAGRTRNGAALQAN-----FVQATYERGMTNSL 386
            G +T  TV + +  +LL+PG+  YS   G  R    L++N      +  T   G+++ L
Sbjct: 283 LGRQTLRTVNFYATDRLLKPGLSSYSAEGGWVRRHYGLRSNDYGQFALSGTARHGVSDWL 342

Query: 387 TLFGGAQAANDYLSAVGGAAFN 408
           TL G A+A +      GGA FN
Sbjct: 343 TLEGHAEAMHGLKLGGGGAVFN 364


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.131    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,501,125
Number of extensions: 104589
Number of successful extensions: 267
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 266
Number of HSP's successfully gapped: 1
Length of query: 824
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 731
Effective length of database: 1,179,515
Effective search space: 862225465
Effective search space used: 862225465
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 135 (56.6 bits)