BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0116.0023.p
         (159 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310869|ref|YP_003774961.1| response regulator for colanic ...   270   3e-74
gi|300312431|ref|YP_003776523.1| two component LuxR family trans...    69   1e-13

>gi|300310869|ref|YP_003774961.1| response regulator for colanic
           capsule biosynthesis protein [Herbaspirillum seropedicae
           SmR1]
          Length = 221

 Score =  270 bits (691), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 124/159 (77%), Positives = 145/159 (91%)

Query: 1   MPTEEKDEADGFILIKRIRTEFPSTKLIVYTAMNNSAVVKRLYRMGVFSVISKKEKAEEL 60
           MP EE DE+DGF L+KRI+ E PSTKLIVYTAMNN AV++RLYRMGVF+VI+K+EK +EL
Sbjct: 62  MPNEESDESDGFALVKRIKAEHPSTKLIVYTAMNNGAVIRRLYRMGVFAVINKREKPDEL 121

Query: 61  VSACLATQSNKQVYFPVSLRGELEMSWAQGDAFAQNKELTMSELEVVRLFVGGCSLGDIC 120
           ++ACLATQS+KQ+YFPVSLRGELEMSWAQGD FA  +ELT SELEVVRLFV G SLG+IC
Sbjct: 122 INACLATQSSKQLYFPVSLRGELEMSWAQGDGFAATRELTQSELEVVRLFVEGQSLGEIC 181

Query: 121 DRLSRTPSTVSTHKNNAMRKLGLTTDADLIKYAYATGMI 159
            RLSRTPST+STHKNNAMRKLGL++DA+LIKYA++TGMI
Sbjct: 182 VRLSRTPSTISTHKNNAMRKLGLSSDAELIKYAFSTGMI 220


>gi|300312431|ref|YP_003776523.1| two component LuxR family
           transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 282

 Score = 69.3 bits (168), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 80/174 (45%), Gaps = 27/174 (15%)

Query: 7   DEADGFILIKRIRTEFPSTKLIVYTAMNNSAVVKRLYRMGVFSVISKKEKAEELVSACLA 66
           ++ DG  LI+ +R  FP +K++V +A NN A V    + G    + K ++  ELV A + 
Sbjct: 105 NDIDGLNLIRALRVRFPRSKILVTSAHNNPATVALAMKAGARGFVGKSQELGELVQA-IR 163

Query: 67  TQSNKQVYFPVSLRGEL--------------------------EMSWAQGDAFAQNKELT 100
           T S  + Y   ++  EL                            S    D+ ++   L+
Sbjct: 164 TVSVGREYLNAAMARELTAMLASDSPTPAPEGGPPQVRPPRRKRNSPPSSDSLSEMPSLS 223

Query: 101 MSELEVVRLFVGGCSLGDICDRLSRTPSTVSTHKNNAMRKLGLTTDADLIKYAY 154
             E EV+R  + G S+  I D+ +R+  T+S  K +A RKLG+ +D +L K  Y
Sbjct: 224 PREREVLRCCLDGLSVTAIADKFARSVKTISGQKQSAFRKLGVRSDNELFKIEY 277


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.131    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 413,673
Number of extensions: 13303
Number of successful extensions: 49
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 2
Length of query: 159
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 81
Effective length of database: 1,250,540
Effective search space: 101293740
Effective search space used: 101293740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)