BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0116.0021.p
         (281 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310867|ref|YP_003774959.1| outer membrane lipoprotein [Her...   367   e-103

>gi|300310867|ref|YP_003774959.1| outer membrane lipoprotein
           [Herbaspirillum seropedicae SmR1]
          Length = 588

 Score =  367 bits (942), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 176/235 (74%), Positives = 199/235 (84%)

Query: 9   ISGVAAEQDPERVNDIRKTWALPVGAPFRQEDWDKAKNQGLDKLQQHKYAAARIARSQAS 68
           ++G AA QD  RV  +R  W+L  G PFRQ+DWDKAKN GL  LQQ KYAAARIA S+A 
Sbjct: 117 VTGSAASQDAARVAQLRTDWSLSPGEPFRQQDWDKAKNAGLATLQQKKYAAARIADSEAR 176

Query: 69  VDPDDQQADLSVQYDSGPRFTLGPLQISGAKRYPESIIRNVNPLNVGEEYDVNRLLSLQR 128
           + P  QQADLSV+YDSGP FTLG LQI+G +RYPESIIRNV+PL VGE YDV+RLL+LQR
Sbjct: 177 IAPQAQQADLSVRYDSGPAFTLGALQITGTRRYPESIIRNVSPLIVGEPYDVDRLLALQR 236

Query: 129 QIQNTPYFSNAIVGIDNDPENADMAPVKVQVTEFATQRIRTGIGYATDTGAQVEGRYSHY 188
           QIQNTPYFSNAIV ID+DP + D  PVKVQVTEF TQRIRTG+GY TDTGAQ EGRYSHY
Sbjct: 237 QIQNTPYFSNAIVAIDDDPAHPDQTPVKVQVTEFPTQRIRTGVGYGTDTGAQAEGRYSHY 296

Query: 189 NVFNKAYVFDSQLRLEQKRQYGLLNLAMPPDSKAFVNSVNASMERTRLEGVDLRS 243
           NVFN+AYVFDSQLRLEQKRQYGLL+LAMPPDSKAFVNS+N + +RT LEG+DLR+
Sbjct: 297 NVFNRAYVFDSQLRLEQKRQYGLLSLAMPPDSKAFVNSINTAYDRTTLEGIDLRT 351



 Score = 73.2 bits (178), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 31/34 (91%), Positives = 34/34 (100%)

Query: 248 GARWRSPVGSLNLDLAYGVQKKQIRPHISLGIAF 281
           GARWRSPVG+LNLDLAYG+QK+QIRPHISLGIAF
Sbjct: 555 GARWRSPVGTLNLDLAYGIQKRQIRPHISLGIAF 588


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 866,899
Number of extensions: 34350
Number of successful extensions: 102
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 2
Length of query: 281
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 197
Effective length of database: 1,222,130
Effective search space: 240759610
Effective search space used: 240759610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)