BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0116.0017.p
         (191 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310866|ref|YP_003774958.1| signal peptide protein [Herbasp...   116   9e-28

>gi|300310866|ref|YP_003774958.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 1300

 Score =  116 bits (291), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 95/159 (59%), Gaps = 9/159 (5%)

Query: 1   LRVALLKDAMLTGKGEFHPADK--------TGRFDFDVAGLDLQAIHNELKPTRLAGPLN 52
           L + L ++  + G G+F P  +         GR    V+ LDL  IH++++PTRL+GP+ 
Sbjct: 319 LEIRLPRNGRIEGAGQFQPGSQDPAQPTPMAGRLALRVSELDLSQIHHQVRPTRLSGPVE 378

Query: 53  VVLHPGGQDVVLKLQDAQYGIHADAAITPEQVTLRQVSLTARKARLELAGTLATVGAMEY 112
             L P  + ++L LQD+   +H D+ +  + V LR+ SLTA K+RLE AG++ TVGAM+Y
Sbjct: 379 ATLGPDARQLLLTLQDSALRLHLDSTLRADTVELREASLTAGKSRLEAAGSMKTVGAMDY 438

Query: 113 AFKGKLADFDPSLWVKTGKAP-ARSGRGXAQGCVRRPCR 150
           AFKG+L DFDP+  ++T  AP A S R   +     P R
Sbjct: 439 AFKGRLVDFDPTAVLQTVTAPTAASARRGGKTVAAIPAR 477


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 685,875
Number of extensions: 29868
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 111
Effective length of database: 1,241,070
Effective search space: 137758770
Effective search space used: 137758770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)