BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0116.0015.p
         (142 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310866|ref|YP_003774958.1| signal peptide protein [Herbasp...   124   3e-30

>gi|300310866|ref|YP_003774958.1| signal peptide protein
            [Herbaspirillum seropedicae SmR1]
          Length = 1300

 Score =  124 bits (311), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 58/77 (75%), Positives = 69/77 (89%)

Query: 1    VIDLRQIEFHGGEGTLRATGKVKLGDADPDLNATIVADRLQLFASPDRQLMLSGQAKLAN 60
            VIDLRQIEFHGG GTLRA GK++LG  +PDLNAT+ A++L+LFASPDR+LMLSGQ K++N
Sbjct: 945  VIDLRQIEFHGGRGTLRAGGKIQLGADNPDLNATLTAEQLELFASPDRRLMLSGQGKISN 1004

Query: 61   VNEQLRIDGKFTVDKAL 77
            VNEQL +DGKFTVD AL
Sbjct: 1005 VNEQLHVDGKFTVDHAL 1021


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.137    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 355,506
Number of extensions: 12624
Number of successful extensions: 41
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 1
Length of query: 142
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 66
Effective length of database: 1,260,010
Effective search space: 83160660
Effective search space used: 83160660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 126 (53.1 bits)