BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0116.0013.p
         (316 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310858|ref|YP_003774950.1| magnesium and cobalt transport ...   384   e-108
gi|300310857|ref|YP_003774949.1| drug/metabolite transporter (DM...   107   2e-24

>gi|300310858|ref|YP_003774950.1| magnesium and cobalt transport
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 328

 Score =  384 bits (987), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 182/230 (79%), Positives = 205/230 (89%), Gaps = 3/230 (1%)

Query: 89  GVAHLPFXGARFVVSVRHGASKSYAKVREHCEMLPERLVRGPSYVLYSIMDFVVDNYGPI 148
           G  H+   G RFVV+VRHGAS+SYAKVREHCEMLPERLVRGPS+VLYSIMDFVVDNY PI
Sbjct: 100 GETHI-LTGPRFVVTVRHGASRSYAKVREHCEMLPERLVRGPSFVLYSIMDFVVDNYRPI 158

Query: 149 MNDLEERFDKYESELFERD--SERAHLQDLYQLKRQLIKIRSAAMPLLDVCTQLLRFHEN 206
           M+DLE +F +YE +LF     S +A+LQ+LYQLKRQLI++RSAA PLLDVCTQLLRFHE 
Sbjct: 159 MDDLEAKFSQYEEQLFNPGTISGKAYLQELYQLKRQLIRLRSAASPLLDVCTQLLRFHEG 218

Query: 207 IITKEGKIYFRDIYDHVVRLIETGDRLREMVAAAMQIDLAQVTIRQNEVVQTLAGWGAIL 266
           +ITK+GK YFRDIYDHVVR I+TGDRLREMV +A+QI+LAQVTI QNE+VQTLAGWGAIL
Sbjct: 219 LITKDGKAYFRDIYDHVVRFIDTGDRLREMVESAVQINLAQVTIHQNEIVQTLAGWGAIL 278

Query: 267 AIPTMIFSLYGMNFAHMPGLDWRWSFPLVLGGIVTGCSLLWRRLRRAGWL 316
           AIPTMIFSLYGMNFAHMPGL W WSFPLVLGGIV+ C+LLWRRLR+AGWL
Sbjct: 279 AIPTMIFSLYGMNFAHMPGLSWEWSFPLVLGGIVSACTLLWRRLRKAGWL 328


>gi|300310857|ref|YP_003774949.1| drug/metabolite transporter (DMT)
           superfamily permease [Herbaspirillum seropedicae SmR1]
          Length = 298

 Score =  107 bits (266), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/81 (65%), Positives = 65/81 (80%)

Query: 13  MLVATVAYAFYSVLLKRWALPIAAWHLLYMQIWVAVILLFPLCLAAPYSPVTAANLPLLL 72
           ML+AT+AY  Y V+L+RWALP+  W LLYMQ+ +AV+LLFP  +   +SPVT  NLP+LL
Sbjct: 158 MLLATIAYGLYGVMLRRWALPLRTWQLLYMQVLMAVVLLFPGFVLGHHSPVTRENLPILL 217

Query: 73  YAGIAASIISQILWMNGVAHL 93
           YAGIAASIISQ LWM GVA+L
Sbjct: 218 YAGIAASIISQFLWMRGVAYL 238


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.141    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 922,260
Number of extensions: 36600
Number of successful extensions: 173
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 2
Length of query: 316
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 231
Effective length of database: 1,217,395
Effective search space: 281218245
Effective search space used: 281218245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)