BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0116.0008.p
         (217 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310855|ref|YP_003774947.1| para-aminobenzoate synthetase c...   181   5e-47

>gi|300310855|ref|YP_003774947.1| para-aminobenzoate synthetase
           component I protein [Herbaspirillum seropedicae SmR1]
          Length = 660

 Score =  181 bits (458), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 101/181 (55%), Positives = 117/181 (64%), Gaps = 8/181 (4%)

Query: 5   CFALLDDSYRHDDANASAGEPRSRLYTGHHATLRCDDADGMGKMLADMHDAQRQGLHAVA 64
           CFALLDD        AS  +PRSRLYT H  TL C DA G   +L +M  A R GLHAVA
Sbjct: 49  CFALLDDH------QASPADPRSRLYTRHVRTLCCTDAAGFAGLLEEMQTALRAGLHAVA 102

Query: 65  LFSYELGGRLHGIAAHARQPGPLAEILLFSECRHLSAAQTDEWLQQQQDAIPTAAAAAAA 124
           L+SYELG  L G+  H R  GPLA +LLF+ C  L+A + D WL     A   A    + 
Sbjct: 103 LWSYELGAALQGLPHH-RLQGPLARVLLFAHCERLAATEVDTWLAASCQA-DGADMFTSG 160

Query: 125 GVANVRASVDEQRFSADIARIRDYIAAGDTYQVNYTYRLHFDAWGEPVSLYNKLRARSRA 184
           G+AN+R+SVDE  FSA IARIRDYIAAGDTYQVNYTYRLH D  G+ + LY +LRAR   
Sbjct: 161 GIANLRSSVDEAAFSAAIARIRDYIAAGDTYQVNYTYRLHGDVHGDAIGLYRRLRARQPV 220

Query: 185 P 185
           P
Sbjct: 221 P 221


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.132    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 619,247
Number of extensions: 22724
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 136
Effective length of database: 1,236,335
Effective search space: 168141560
Effective search space used: 168141560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)