BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0116.0004.p (230 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310851|ref|YP_003774943.1| RND family efflux transporter M... 313 8e-87 gi|300311797|ref|YP_003775889.1| membrane-fusion protein [Herbas... 135 3e-33 gi|300309820|ref|YP_003773912.1| acriflavin resistance lipoprote... 84 1e-17 gi|300309658|ref|YP_003773750.1| HlyD-family secretion protein [... 67 2e-12 gi|300310689|ref|YP_003774781.1| RND family efflux transporter M... 58 6e-10 >gi|300310851|ref|YP_003774943.1| RND family efflux transporter MFP subunit [Herbaspirillum seropedicae SmR1] Length = 466 Score = 313 bits (802), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 151/201 (75%), Positives = 174/201 (86%) Query: 1 VHSSDTNGIVIITQVQPITAVFSIPEDNIPAVMKQLQAGKKLATDAWDRDQKNKLASGVL 60 V +SDTNG+VIITQ+QPITA+FSIPEDNIP V++QLQ+G+KL AWDR+QKNKLA GVL Sbjct: 189 VTTSDTNGLVIITQLQPITAIFSIPEDNIPKVLQQLQSGRKLPAQAWDREQKNKLADGVL 248 Query: 61 LTIDNQVDATTGTIKLKAQFPNTDYALFPNQFVNIRMLLDTRKDAVTIPTAALQRGSKGL 120 LTIDN VDATTGT+KLKAQFPNTDYALFP+QFVNIR+ L+T + A IPTAA+QRGSKGL Sbjct: 249 LTIDNVVDATTGTVKLKAQFPNTDYALFPSQFVNIRLQLNTEQGATVIPTAAIQRGSKGL 308 Query: 121 FVYVVKSDNTVTVRNVKTGPAQGDITAIEDGVANGETVVVDGIDRLREGAKVEPVVRGGA 180 FVYVVK D++VTVR VKTGP Q D+T I DGV+ GETVV+DGIDRLREGAKVE V RGGA Sbjct: 309 FVYVVKDDSSVTVRPVKTGPVQDDLTVITDGVSAGETVVIDGIDRLREGAKVEAVARGGA 368 Query: 181 DDPANKLTEKAGPRRHKRXGR 201 DDPANKLT + RRH + G+ Sbjct: 369 DDPANKLTTENPERRHGKRGQ 389 >gi|300311797|ref|YP_003775889.1| membrane-fusion protein [Herbaspirillum seropedicae SmR1] Length = 403 Score = 135 bits (340), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 65/175 (37%), Positives = 114/175 (65%), Gaps = 3/175 (1%) Query: 1 VHSSDTNGIVIITQVQPITAVFSIPEDNIPAVMKQLQAGKK-LATDAWDRDQKNKLASGV 59 VH++D NG+V+I Q+ PIT VF++PE+ + + + +A ++ L A+ RD + LA+G Sbjct: 206 VHATDANGLVVINQIDPITLVFTLPEEAVAGINRAQRAHQQPLQVSAYARDSQEVLATGK 265 Query: 60 LLTIDNQVDATTGTIKLKAQFPNTDYALFPNQFVNIRMLLDTRKDAVTIPTAALQRGSKG 119 L+ +DNQ++ T GT++LKA+F N D+ L+P Q+VN R+ + + +A+T+P AA+QR +G Sbjct: 266 LVLLDNQINTTNGTVQLKARFDNPDHKLWPGQYVNARLQMRSHGNALTVPAAAIQRNQQG 325 Query: 120 LFVYVVKSDNTVTVRNVKTGPAQGDITAIEDG--VANGETVVVDGIDRLREGAKV 172 +VY + ++ ++ VK Q I + G V G+ VV+DG +L+ G+++ Sbjct: 326 TYVYAIDQEDQARMQPVKVERIQDGIAVLAAGNAVQAGQRVVIDGQYKLKPGSRI 380 >gi|300309820|ref|YP_003773912.1| acriflavin resistance lipoprotein A [Herbaspirillum seropedicae SmR1] Length = 402 Score = 83.6 bits (205), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 48/128 (37%), Positives = 73/128 (57%) Query: 58 GVLLTIDNQVDATTGTIKLKAQFPNTDYALFPNQFVNIRMLLDTRKDAVTIPTAALQRGS 117 G LL D VD TG++ L+A+FPN L P +V ++ + A+ +P A+ R + Sbjct: 258 GKLLFSDISVDENTGSVSLRAEFPNPKRLLLPGTYVRAKIEQAVDEQALLVPQQAVVRDA 317 Query: 118 KGLFVYVVKSDNTVTVRNVKTGPAQGDITAIEDGVANGETVVVDGIDRLREGAKVEPVVR 177 G V VV ++N V R VKTG A+G+ + DG+ G+ V+V+G+ ++R GA V+PV Sbjct: 318 GGSTVMVVNAENKVEPRPVKTGGARGNNWQVLDGLKEGDRVIVEGLQKVRPGATVKPVQW 377 Query: 178 GGADDPAN 185 A PA Sbjct: 378 NPAGAPAQ 385 >gi|300309658|ref|YP_003773750.1| HlyD-family secretion protein [Herbaspirillum seropedicae SmR1] Length = 399 Score = 66.6 bits (161), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 57/115 (49%) Query: 62 TIDNQVDATTGTIKLKAQFPNTDYALFPNQFVNIRMLLDTRKDAVTIPTAALQRGSKGLF 121 ++DN++D +GTI+++A F N + L P + +R+ AV I A+ F Sbjct: 269 SVDNRLDTASGTIRVRAIFDNANSQLVPGLYARVRLGGGEPHQAVLIDEKAIGTDQDKRF 328 Query: 122 VYVVKSDNTVTVRNVKTGPAQGDITAIEDGVANGETVVVDGIDRLREGAKVEPVV 176 V V DN R V G + IE G+ GE +VV+G+ R+R G + P V Sbjct: 329 VMVADKDNHANYRQVVVGAGHDGLVVIEKGLQPGERIVVNGLQRIRPGDAITPTV 383 >gi|300310689|ref|YP_003774781.1| RND family efflux transporter MFP subunit [Herbaspirillum seropedicae SmR1] Length = 400 Score = 58.2 bits (139), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 57/119 (47%), Gaps = 1/119 (0%) Query: 58 GVLLTIDNQVDATTGTIKLKAQFPNTDYALFPNQFVNIRMLLDTRKDAVTIPTAALQRGS 117 G L D V+ TG I L+A FPN L P +V + R+ + +P A+ R Sbjct: 259 GTLQFSDVTVNQDTGAITLRAIFPNPKTDLLPGMYVRAVLQEGVRQQGLLVPQQAVSRDG 318 Query: 118 KGLFV-YVVKSDNTVTVRNVKTGPAQGDITAIEDGVANGETVVVDGIDRLREGAKVEPV 175 G V +VV + V R + T A GD + G+ G+ +VVDG R GAKV+ V Sbjct: 319 AGKPVAFVVNAQGVVEQRALVTDRAIGDQWLVSSGLKEGDQLVVDGQQRASAGAKVKVV 377 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.132 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 647,068 Number of extensions: 24651 Number of successful extensions: 86 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 87 Number of HSP's successfully gapped: 5 Length of query: 230 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 148 Effective length of database: 1,231,600 Effective search space: 182276800 Effective search space used: 182276800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)