BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0116.0002.p
         (111 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310850|ref|YP_003774942.1| hypothetical protein Hsero_1519...    84   3e-18

>gi|300310850|ref|YP_003774942.1| hypothetical protein Hsero_1519
           [Herbaspirillum seropedicae SmR1]
          Length = 179

 Score = 83.6 bits (205), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 59/91 (64%), Gaps = 3/91 (3%)

Query: 21  RLDRXDWSKLTTPERLDRHLDRMKKMEARMADHIAATKEFYAVLSPEQQKVFDQEFRKME 80
           R ++ +W+KL+TPERLD+ LD M+K EA     IAATK+FYA LSP+QQK+FD E  KME
Sbjct: 88  RPNKDEWAKLSTPERLDKQLDMMRKREAFAEQRIAATKDFYATLSPQQQKIFDAEHAKME 147

Query: 81  EHRF---KHGRFGGDHDRDHGKPGAPAAAPA 108
            HR+   +H R G      H    AP A PA
Sbjct: 148 RHRWEKMEHMRRGDRKGPPHDGNPAPVAPPA 178


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 253,260
Number of extensions: 8123
Number of successful extensions: 24
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 1
Length of query: 111
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 38
Effective length of database: 1,274,215
Effective search space: 48420170
Effective search space used: 48420170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 124 (52.4 bits)