BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0115.0011.p
         (187 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310752|ref|YP_003774844.1| glutamate-ammonia-ligase adenyl...   299   9e-83

>gi|300310752|ref|YP_003774844.1| glutamate-ammonia-ligase
           adenylyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 927

 Score =  299 bits (766), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 152/183 (83%), Positives = 166/183 (90%)

Query: 1   MMAASDWAAQYLTQHPILLDELLDDRNLKAQPDWPAFAQDCQRQLDTAPGDTERQMDILR 60
           M+ AS WAA YLT+HP+LLDELLDDRNLKA  DW AFA++C+RQL TA GDTERQ+DILR
Sbjct: 559 MIGASGWAATYLTRHPLLLDELLDDRNLKAASDWAAFAENCRRQLATAEGDTERQLDILR 618

Query: 61  EVHHAQLFRLLAQDLEGDLSVEHLADHLSALADILVAATIQAVWQTIANRHREAPQFTVI 120
           E+HHA+ FRLLAQDLEGDLSVE LAD LSALAD+LV  TI+AVWQT+A RHRE PQF VI
Sbjct: 619 ELHHAEQFRLLAQDLEGDLSVEKLADELSALADVLVQVTIEAVWQTVAQRHREVPQFAVI 678

Query: 121 AYGKLGGKELGYVSDLDVVFLYDDDDQEAPGLYAKLAQRFITWMTSHTPAGTLFDIDIAL 180
           AYGKLGGKELGY SDLDVVFLYDD+DQ+APGLYAKLAQRFITWMTSHTPAGTLFDIDIAL
Sbjct: 679 AYGKLGGKELGYASDLDVVFLYDDEDQDAPGLYAKLAQRFITWMTSHTPAGTLFDIDIAL 738

Query: 181 RPD 183
           RPD
Sbjct: 739 RPD 741



 Score = 57.0 bits (136), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 18/143 (12%)

Query: 59  LREVHHAQLFRLLAQDLEGDLSVEHLADHLSALADILVAATIQAVWQT--------IANR 110
           +R + +  +  L+ +DL+G   ++ +   ++  AD  V   + A+ Q         I   
Sbjct: 85  MRRLRNLVICTLITRDLDGRGDLDEVVTTMTGFADFAVQTHLAALMQEQTALYGLPIGEE 144

Query: 111 HREAPQFTVIAYGKLGGKELGYVSDLDVVFLY-DDDDQEAPG---------LYAKLAQRF 160
                +  V+  GKLGG EL   SD+D++F+Y +D D  A            + +L ++ 
Sbjct: 145 SGRPQEMIVLGMGKLGGGELNVSSDIDLIFVYPEDGDTRAEAGQKSLSNHEFFVRLGKKL 204

Query: 161 ITWMTSHTPAGTLFDIDIALRPD 183
           I  +   T  G  F +D+ALRP+
Sbjct: 205 IGALAEITEDGFTFRVDMALRPN 227


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 584,019
Number of extensions: 20876
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 2
Length of query: 187
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 107
Effective length of database: 1,241,070
Effective search space: 132794490
Effective search space used: 132794490
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)