BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0115.0007.p
         (232 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311795|ref|YP_003775887.1| signal peptidase I (SPase I) fa...   213   1e-56
gi|300311259|ref|YP_003775351.1| signal peptidase I (SPase I) fa...   120   1e-28

>gi|300311795|ref|YP_003775887.1| signal peptidase I (SPase I)
           family protein [Herbaspirillum seropedicae SmR1]
          Length = 231

 Score =  213 bits (541), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 115/226 (50%), Positives = 150/226 (66%), Gaps = 8/226 (3%)

Query: 6   AIKKLISANKGFLCFLLGMLLIRSAVADWYGVPSASMYPTLLIGDRIISNRLAYDVKLPF 65
            + KL++ NKG L F+  M++ RSA+AD+  VPS SM PT+ IGDRI+ +++AYD++LP 
Sbjct: 4   TLNKLLADNKGLLAFIALMVMFRSAIADYNVVPSGSMLPTVQIGDRILVDKMAYDLRLPL 63

Query: 66  TDIVVGRIADPQRGDIVTFSSPEDGTRLVKRLIGLPGDIVEMRDEQLVINGKPMTYDAAA 125
           T I + R+ +PQRGDIVT  S + G  LVKR++GLPGD+VE+RD  L ING+P  Y  AA
Sbjct: 64  THISLLRLGEPQRGDIVTIDSRQAGELLVKRIVGLPGDVVELRDNVLFINGQPAHYHPAA 123

Query: 126 AAPASHRMPDYDGS-QMIVR-ESLPAMAHGVMLLPQRMALR-SFGPLTVPAGQYLVLGDN 182
            AP +      DGS Q   R E   AM H V L     +L  S+GP+ VP G Y++LGDN
Sbjct: 124 EAPEAG-----DGSDQAAYRDERYGAMEHAVRLSAAHPSLHSSYGPVVVPPGHYMMLGDN 178

Query: 183 RDDSKDSRYIGFVPRALLTGRVSRVMFSLDPQRHYLPRVKRFGAAL 228
           RD+S DSRY GF  R  L GR  R+ FSLD +R Y PR++RFG  L
Sbjct: 179 RDNSMDSRYFGFFARDELMGRTRRIAFSLDAERGYRPRLERFGQLL 224


>gi|300311259|ref|YP_003775351.1| signal peptidase I (SPase I)
           family protein [Herbaspirillum seropedicae SmR1]
          Length = 304

 Score =  120 bits (301), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 119/223 (53%), Gaps = 31/223 (13%)

Query: 11  ISANKGFLCFLLGMLLIRSAVADWYGVPSASMYPTLLIGDRIISNRLAYDVKLPFTDIVV 70
           I  +  F   +  +  +RS + + + +PS+SM PTLL+GD I+ N+  Y ++LP  +  +
Sbjct: 81  IEYSGSFFPVIALVFCLRSFLYEPFKIPSSSMVPTLLVGDLILVNKFTYGIRLPIINKKI 140

Query: 71  GRIADPQRGDIVTFSSPED-GTRLVKRLIGLPGDIVEMRDEQLVINGKPMTYDAAAAAPA 129
             +  PQRGD++ F  P+D     +KR++G+PGD +  ++++L +NG+ ++Y A      
Sbjct: 141 IEVNQPQRGDVMVFKYPKDMSVDYIKRVVGVPGDKIVYKNKRLTVNGEQISYKA------ 194

Query: 130 SHRMPDYDGSQMIV-----RESLPAMAHGVM-------LLPQ-----RMALRSFG----P 168
              +PDY   + +      +E+L  + H ++        +P         L ++      
Sbjct: 195 ---LPDYLDEENLTYYKQWQENLTGVEHKILTDERAPNFVPNPDAFPHHELCTYNAEGFA 251

Query: 169 LTVPAGQYLVLGDNRDDSKDSRYIGFVPRALLTGRVSRVMFSL 211
            TVP G+Y ++GDNRD+S DSRY GFVP   + G+   V  +L
Sbjct: 252 CTVPPGEYFMMGDNRDNSLDSRYWGFVPDQNIVGKAFFVWMNL 294


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.140    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 743,953
Number of extensions: 31324
Number of successful extensions: 94
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 2
Length of query: 232
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 150
Effective length of database: 1,231,600
Effective search space: 184740000
Effective search space used: 184740000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)