BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0115.0001.p (260 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310745|ref|YP_003774837.1| amidase family protein [Herbasp... 336 1e-93 gi|300313752|ref|YP_003777844.1| Asp-tRNAAsn/Glu-tRNAGln amidotr... 212 3e-56 gi|300309904|ref|YP_003773996.1| aspartate tRNAAsn/Glu-tRNAGln a... 101 6e-23 gi|300311162|ref|YP_003775254.1| amidase family protein [Herbasp... 100 1e-22 gi|300311728|ref|YP_003775820.1| indole acetamide hydrolase [Her... 95 7e-21 >gi|300310745|ref|YP_003774837.1| amidase family protein [Herbaspirillum seropedicae SmR1] Length = 611 Score = 336 bits (861), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 178/230 (77%), Positives = 198/230 (86%) Query: 12 PNPVAPQRTIADVLASYRTGSLKPSKLIGDLLTQIEQSDRTEVWIHRVPAKMLRQQAAAL 71 P VA TIA LA+YR GS P K + LL IEQ+DR EVWI RVPAK L+QQAAAL Sbjct: 7 PQQVAAPVTIASTLAAYRNGSSTPGKTVASLLALIEQADREEVWISRVPAKQLKQQAAAL 66 Query: 72 DLMLQIKGEAVFDTMPLFGIPFAVKDNIDVAELPTTAACPEFSYVPQVTATVVARLRQAG 131 DLM QIKGE V ++MPLFGIPFAVKDNIDVA +PTTAACPEFS V + +ATVV RL+ AG Sbjct: 67 DLMWQIKGETVLESMPLFGIPFAVKDNIDVAGMPTTAACPEFSRVAETSATVVQRLQAAG 126 Query: 132 AVLIGKTNLDQFATGLVGVRSPYGAVRNALQPDYVSGGSSSGSAVAVALGQVLFSLGTDT 191 A+L+GKTNLDQFATGLVGVRSPYGAVRNA+ PDYVSGGSSSGSAVAVALGQV+F+LGTDT Sbjct: 127 ALLVGKTNLDQFATGLVGVRSPYGAVRNAIAPDYVSGGSSSGSAVAVALGQVMFALGTDT 186 Query: 192 AGSGRVPAAFNNLVGLKPTRGLLSGSGMVPACRTLDCISIFAHDVADAWR 241 AGSGR+PAAFN+LVGLKP+RGL+S G+VPACRTLDCISIFAHDVADAW Sbjct: 187 AGSGRIPAAFNHLVGLKPSRGLISAQGLVPACRTLDCISIFAHDVADAWH 236 >gi|300313752|ref|YP_003777844.1| Asp-tRNAAsn/Glu-tRNAGln amidotransferase subunit A [Herbaspirillum seropedicae SmR1] Length = 471 Score = 212 bits (539), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 123/220 (55%), Positives = 158/220 (71%), Gaps = 8/220 (3%) Query: 21 IADVLASYRTGSLKPSKLIGDLLTQIEQSDRT-EVWIHRVPAKMLRQQAAALDLMLQIKG 79 I + A+YR GSL P ++ L + T ++IH +L Q A + LQ Sbjct: 9 IDALTAAYRNGSLDPRTVMQRLRESAAALNPTYRLYIH-----LLSQ--AETEPYLQALE 61 Query: 80 EAVFDTMPLFGIPFAVKDNIDVAELPTTAACPEFSYVPQVTATVVARLRQAGAVLIGKTN 139 + ++PL+G+PF++KDNID+A +PTTAACP FSYVP+ +AT+VA+L GA+ +GK N Sbjct: 62 QQSPHSLPLYGVPFSIKDNIDLAGVPTTAACPAFSYVPRESATLVAQLIALGAIPVGKCN 121 Query: 140 LDQFATGLVGVRSPYGAVRNALQPDYVSGGSSSGSAVAVALGQVLFSLGTDTAGSGRVPA 199 LDQFATGL G RSPYGA RN++ PDY SGGSSSGS++AVALG F+LGTDTAGSGRVPA Sbjct: 122 LDQFATGLNGTRSPYGACRNSVHPDYPSGGSSSGSSLAVALGLSSFALGTDTAGSGRVPA 181 Query: 200 AFNNLVGLKPTRGLLSGSGMVPACRTLDCISIFAHDVADA 239 A NNLVGLK T+GLLS +G+VPACRTLDC++ F A+A Sbjct: 182 ALNNLVGLKATKGLLSTAGVVPACRTLDCVTFFTATAAEA 221 >gi|300309904|ref|YP_003773996.1| aspartate tRNAAsn/Glu-tRNAGln amidotransferase subunit A-like protein [Herbaspirillum seropedicae SmR1] Length = 651 Score = 101 bits (252), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 68/153 (44%), Positives = 86/153 (56%), Gaps = 1/153 (0%) Query: 87 PLFGIPFAVKDNIDVAELPTTAACPEFSYVP-QVTATVVARLRQAGAVLIGKTNLDQFAT 145 PL GIP VKDN D ++PTT + + Q A V RLR+AGAV++GKT + + A Sbjct: 118 PLHGIPILVKDNYDTVDMPTTGGTLALATLQAQADAFQVKRLREAGAVILGKTTMHELAA 177 Query: 146 GLVGVRSPYGAVRNALQPDYVSGGSSSGSAVAVALGQVLFSLGTDTAGSGRVPAAFNNLV 205 G+ V S G RN P GGSS G+ AVA +G+DT GS R+PAA NL Sbjct: 178 GVTTVSSLTGFTRNPYDPRRAPGGSSGGTGAAVAASFAAAGMGSDTCGSIRIPAAHQNLF 237 Query: 206 GLKPTRGLLSGSGMVPACRTLDCISIFAHDVAD 238 GL+ TRGL S SG++P T D + A V D Sbjct: 238 GLRTTRGLASRSGVMPLSSTQDVAAPLARSVED 270 >gi|300311162|ref|YP_003775254.1| amidase family protein [Herbaspirillum seropedicae SmR1] Length = 450 Score = 100 bits (249), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 64/156 (41%), Positives = 88/156 (56%), Gaps = 6/156 (3%) Query: 87 PLFGIPFAVKDNIDVAELPTTAACPEFSYVPQVTA--TVVARLRQAGAVLIGKTNLDQFA 144 PL G+P +VKD DVA T A P +A VV L +AGA+LIGKTN+ +FA Sbjct: 68 PLEGVPVSVKDLFDVAGETTLAGSVVLRGKPVASAHAAVVQNLLKAGAILIGKTNMTEFA 127 Query: 145 TGLVGVRSPYGAVRNALQPDY----VSGGSSSGSAVAVALGQVLFSLGTDTAGSGRVPAA 200 +G+ YG +NA + + + GGSSSG+A++V G ++G+DT GS R+P+A Sbjct: 128 YSGLGINPHYGTPQNAWERNIEGGRIPGGSSSGAAISVTDGMAFAAVGSDTGGSVRIPSA 187 Query: 201 FNNLVGLKPTRGLLSGSGMVPACRTLDCISIFAHDV 236 N L G KPT +S G++P LD I A V Sbjct: 188 LNGLTGFKPTAARVSMQGVLPLSAYLDSIGPLAVSV 223 >gi|300311728|ref|YP_003775820.1| indole acetamide hydrolase [Herbaspirillum seropedicae SmR1] Length = 468 Score = 94.7 bits (234), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 76/203 (37%), Positives = 103/203 (50%), Gaps = 10/203 (4%) Query: 37 KLIGDLLTQIEQSDRTEVWIHRVPAKMLRQQAAALDLMLQIKGEAVFDTMPLFGIPFAVK 96 + + L+ + E ++ R P + LR QA LD + G PL GIP A+K Sbjct: 24 EYVDALIAETEAQWDLNCYLQRDP-EQLRSQARMLD---EQGGHG-----PLSGIPIAIK 74 Query: 97 DNIDVAELPTTAACPEF-SYVPQVTATVVARLRQAGAVLIGKTNLDQFATGLVGVRSPYG 155 DNIDVA + +TA + VPQ ATVV L AGA+ GK N+ + A G+ +G Sbjct: 75 DNIDVAGIASTAGTAALRNNVPQRHATVVEYLFGAGALHAGKANMHELAFGITNNNGVFG 134 Query: 156 AVRNALQPDYVSGGSSSGSAVAVALGQVLFSLGTDTAGSGRVPAAFNNLVGLKPTRGLLS 215 RN + ++GGSS G +A ++GTDT GS R+PAA +VGL+PT S Sbjct: 135 PCRNPYDAELIAGGSSGGCGALLAARLAPAAVGTDTGGSVRIPAALCGVVGLRPTSRRYS 194 Query: 216 GSGMVPACRTLDCISIFAHDVAD 238 G+VP T D A VAD Sbjct: 195 QHGVVPISHTRDTPGPMARSVAD 217 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.134 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 816,365 Number of extensions: 32425 Number of successful extensions: 109 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 103 Number of HSP's successfully gapped: 11 Length of query: 260 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 177 Effective length of database: 1,226,865 Effective search space: 217155105 Effective search space used: 217155105 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)