BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0114.0005.p
         (81 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311885|ref|YP_003775977.1| LuxR family two component respo...    73   4e-15

>gi|300311885|ref|YP_003775977.1| LuxR family two component response
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 216

 Score = 73.2 bits (178), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 62/81 (76%), Gaps = 5/81 (6%)

Query: 2   VDDYLLESRVA---GPLDALSAREREVLQLVAEGHSSAQVAAMLSLSPKSIETYRSRLMQ 58
           +D+Y+   RVA    P++ L+ R+RE+LQL+AEG+++ ++A  L++S K+IET+R++LM+
Sbjct: 135 LDNYM--KRVAQNGTPVEVLTPRQREILQLIAEGNNTKEIAYQLNVSAKTIETHRAQLME 192

Query: 59  KIGVSDLPSLVKFSIHHGLIS 79
           ++ + D+P LV+++I  G+ +
Sbjct: 193 RLDIRDVPGLVRYAIRTGIAT 213


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.131    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 207,628
Number of extensions: 5523
Number of successful extensions: 46
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 1
Length of query: 81
Length of database: 1,619,870
Length adjustment: 52
Effective length of query: 29
Effective length of database: 1,373,650
Effective search space: 39835850
Effective search space used: 39835850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 123 (52.0 bits)