BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0113.0009.p
         (153 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310060|ref|YP_003774152.1| nicotinamidase-like protein [He...   103   7e-24

>gi|300310060|ref|YP_003774152.1| nicotinamidase-like protein
           [Herbaspirillum seropedicae SmR1]
          Length = 202

 Score =  103 bits (256), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 67/86 (77%)

Query: 67  LRQAXKKAGKKELIIAGFATHMCISATTRSALDHGYVSTVVAAACATRDLPDALGQGVVS 126
           L +  KK G+K LIIAGFATHMC+SAT RSALDHGY  TVVAAACATRDLPD LG   +S
Sbjct: 114 LDETLKKTGRKSLIIAGFATHMCVSATVRSALDHGYACTVVAAACATRDLPDPLGGPALS 173

Query: 127 AAEVQRATLAALADRFATIVPDAAAL 152
           AAE+QR  LA LADR+AT+V  A  L
Sbjct: 174 AAEIQRVALAELADRYATVVAHAGLL 199



 Score = 86.3 bits (212), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 40/58 (68%), Positives = 49/58 (84%)

Query: 13 MSTPKTLLQIAGAAPRSPKWQDAALVLIDHQTEYTIGGVPLAGIDAAVSEIAVLLRQA 70
          MSTP+TL+QIAG +PR+  WQ+AALV+IDHQTEYT G  PLAGI AAV+E+A+LL  A
Sbjct: 1  MSTPQTLIQIAGGSPRAATWQEAALVIIDHQTEYTTGRAPLAGIGAAVAEVALLLEHA 58


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.130    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 459,661
Number of extensions: 16599
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 2
Length of query: 153
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 76
Effective length of database: 1,255,275
Effective search space: 95400900
Effective search space used: 95400900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)