BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0113.0003.p
         (128 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310056|ref|YP_003774148.1| metal-dependent hydrolase [Herb...   168   1e-43

>gi|300310056|ref|YP_003774148.1| metal-dependent hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 151

 Score =  168 bits (425), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 92/124 (74%), Positives = 107/124 (86%), Gaps = 4/124 (3%)

Query: 6   IRRWIQAALFAPAELTIRFVDAEEGRTLNREYREKDYATNVLTFAYTEDEDAEVTQADII 65
           +RRW+QAALFAPA+LT+RFV +EEGR LNR+YR KDYATNVLTFAYTEDED+EVT+ADII
Sbjct: 26  LRRWVQAALFAPAQLTLRFVGSEEGRDLNRDYRGKDYATNVLTFAYTEDEDSEVTEADII 85

Query: 66  LCTDVLEKEAKEQKKPLLDHAAHLIVHGVLHAQGYDHEDEEEATEMETLETE----XGNF 121
            CTDVLEKEA EQKK + +H AHL+VHGVLHAQGYDHED+EEA EME LETE     G  
Sbjct: 86  FCTDVLEKEAAEQKKSVEEHTAHLVVHGVLHAQGYDHEDDEEADEMEALETEILAGLGYA 145

Query: 122 SPFS 125
           +P++
Sbjct: 146 NPYA 149


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.131    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 349,576
Number of extensions: 11250
Number of successful extensions: 33
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 1
Length of query: 128
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 53
Effective length of database: 1,264,745
Effective search space: 67031485
Effective search space used: 67031485
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 125 (52.8 bits)